Evidence map›Paper›PMID 38844821›Full record

ArticleNature communications2024

Single-cell transcriptomic atlas reveals increased regeneration in diseased human inner ear balance organs.

Tian Wang, Angela H Ling, Sara E Billings, Davood K Hosseini, Yona Vaisbuch, Grace S Kim, Patrick J Atkinson, Zahra N Sayyid, Ksenia A Aaron, Dhananjay Wagh and 16 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
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  9. Review
  10. Article
  11. Article
  12. A Case of Calcification Discovered Within the Membranous Labyrinth During Resection of a Vestibular Schwannoma.Otology & neurotology : official publication of the American Otological Society, American Neurotology Society [and] European Academy of Otology and Neurotology · 2025
    Article
  13. Article
  14. Article
  15. EDNRB2 regulates fate, migration, and maturation of hair cell precursors in regenerating avian auditory epithelium explants.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Crosstalk Signaling Between the Epithelial and Non-Epithelial Compartments of the Mouse Inner Ear.Journal of the Association for Research in Otolaryngology : JARO · 2025
    Article
  18. The Diverse Functions of the Calcium- and Integrin-Binding Protein Family.International journal of molecular sciences · 2025
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Tian WangDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Angela H LingDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Sara E BillingsDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-5512-8675
Davood K HosseiniDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-0393-8016
Yona VaisbuchDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Grace S KimDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Patrick J AtkinsonDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Zahra N SayyidDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-6872-7028
Ksenia A AaronDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Dhananjay WaghStanford Genomics Facility, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Nicole PhamDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-6719-3159
Mirko ScheibingerDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Ruiqi ZhouDepartment of Otolaryngology - Head and Neck Surgery, Epithelial Biology Center, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Akira IshiyamaDepartment of Head and Neck Surgery, University of California Los Angeles, Los Angeles, CA, 90095, USA.
Lindsay S MooreDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Peter Santa MariaDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Nikolas H BlevinsDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Robert K JacklerDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Jennifer C AlyonoDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.
John KvetonDepartment of Surgery, Yale University School of Medicine, New Haven, CT, 06510, USA.
Dhasakumar NavaratnamDepartment of Surgery, Yale University School of Medicine, New Haven, CT, 06510, USA.ORCID http://orcid.org/0000-0002-5431-8191
Stefan HellerDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-0490-4440
Ivan A LopezDepartment of Head and Neck Surgery, University of California Los Angeles, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0001-5205-7293
Nicolas GrilletDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-8007-9246
Taha A JanDepartment of Otolaryngology - Head and Neck Surgery, Epithelial Biology Center, Vanderbilt University Medical Center, Nashville, TN, 37232, USA. taha.a.jan@vumc.org.ORCID http://orcid.org/0000-0001-8971-7769
Alan G ChengDepartment of Otolaryngology - Head and Neck Surgery, Stanford University School of Medicine, Stanford, CA, 94305, USA. aglcheng@stanford.edu.ORCID http://orcid.org/0000-0002-4702-8401

Funding

Stanford Center for Clinical & Translational Education and Research (Spectrum)UL1TR003142 · NCATS · STANFORD UNIVERSITY · PI O'HARA, RUTH M · 2019 to 2023
$45.0M
Spectrum Stanford Center for clinical and Translational Research and EducationUL1TR001085 · NCATS · STANFORD UNIVERSITY · PI CULLEN, MARK RICHARD, GREENBERG, HARRY BERNARD · 2013 to 2017
$37.1M
Membrane properties of the OHC systemR01DC016318 · NIDCD · YALE UNIVERSITY · PI DHASAKUMAR S NAVARATNAM, JOSEPH R SANTOS-SACCHI · 2017 to 2026
$6.7M
Mouse vestibular regeneration and functionR01DC016919 · NIDCD · STANFORD UNIVERSITY · PI Alan Gi-Lun Cheng · 2019 to 2026
$4.9M
The Human Temporal Bone Laboratory Resource for Basic and Applied Inner Ear SciencesU24DC015910 · NIDCD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ISHIYAMA, AKIRA · 2017 to 2022
$4.2M
Human Ear Cellular AtlasU24DC020857 · NIDCD · STANFORD UNIVERSITY · PI Alan Gi-Lun Cheng, Konstantina M Stankovic · 2022 to 2026
$3.6M
Molecular basis of mammalian cochlear regenerationR01DC021110 · NIDCD · STANFORD UNIVERSITY · PI Alan Gi-Lun Cheng · 2023 to 2026
$2.6M
Diversification of the mechanotransduction complex in vestibular hair cellsR01DC020879 · NIDCD · STANFORD UNIVERSITY · PI Alan Gi-Lun Cheng, Teresa A Nicolson · 2023 to 2026
$2.6M
Molecular Genetics of Human Age-Related Hearing LossR01AG081608 · NIA · UNIVERSITY OF KENTUCKY · PI Nicolas Grillet · 2023 to 2026
$2.3M
Function of LOXHD1 in mechanosensory hair cellsR01DC016409 · NIDCD · STANFORD UNIVERSITY · PI GRILLET, NICOLAS · 2018 to 2022
$2.1M
Pathways towards regenerating the mammalian cochleaR01DC013910 · NIDCD · STANFORD UNIVERSITY · PI CHENG, ALAN GI-LUN · 2015 to 2019
$2.1M
Single cell analysis of mitotic regeneration in the mouse vestibular systemK08DC019683 · NIDCD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI JAN, TAHA A · 2021 to 2025
$941k
NCATS NIH HHS UL1 TR001085NCATS NIH HHS UL1 TR003142NIA NIH HHS R01 AG081608NIDCD NIH HHS F30 DC015698NIDCD NIH HHS K08 DC019683NIDCD NIH HHS K24 DC020986NIDCD NIH HHS R01 DC013910NIDCD NIH HHS R01 DC016318NIDCD NIH HHS R01 DC016409NIDCD NIH HHS R01 DC016919NIDCD NIH HHS R01 DC020879NIDCD NIH HHS R01 DC021110NIDCD NIH HHS R21 DC015879NIDCD NIH HHS R21 DC019457NIDCD NIH HHS R21 DC022058NIDCD NIH HHS T32 DC015209NIDCD NIH HHS U24 DC015910NIDCD NIH HHS U24 DC020857NIH HHS S10 OD018220NIH HHS S10 OD021763
6 · The paper itself

Abstract

Mammalian inner ear hair cell loss leads to permanent hearing and balance dysfunction. In contrast to the cochlea, vestibular hair cells of the murine utricle have some regenerative capacity. Whether human utricular hair cells regenerate in vivo remains unknown. Here we procured live, mature utricles from organ donors and vestibular schwannoma patients, and present a validated single-cell transcriptomic atlas at unprecedented resolution. We describe markers of 13 sensory and non-sensory cell types, with partial overlap and correlation between transcriptomes of human and mouse hair cells and supporting cells. We further uncover transcriptomes unique to hair cell precursors, which are unexpectedly 14-fold more abundant in vestibular schwannoma utricles, demonstrating the existence of ongoing regeneration in humans. Lastly, supporting cell-to-hair cell trajectory analysis revealed 5 distinct patterns of dynamic gene expression and associated pathways, including Wnt and IGF-1 signaling. Our dataset constitutes a foundational resource, accessible via a web-based interface, serving to advance knowledge of the normal and diseased human inner ear.

Indexed as

RegenerationSingle-Cell AnalysisTranscriptomeAnimalsEar, InnerFemaleGene Expression ProfilingHair Cells, VestibularHumansInsulin-Like Growth Factor IMaleMiceNeuroma, AcousticSaccule and UtricleInsulin-Like Growth Factor I

Identifiers

PMID38844821
PMCPMC11156867

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.