Evidence map›Paper›PMID 38844753›Full record

ArticleScientific data2024

A haplotype-resolved genome assembly of Malus domestica 'Red Fuji'.

Haixu Peng, Yating Yi, Jinrong Li, You Qing, Xuyang Zhai, Yulin Deng, Ji Tian, Jie Zhang, Yujing Hu, Xiaoxiao Qin and 4 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Haixu Peng *Beijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
Yating Yi *Beijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
Jinrong LiBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
You QingBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.ORCID 0000-0002-7273-3364
Xuyang ZhaiBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
Yulin DengBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
Ji TianBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
Jie ZhangBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
Yujing HuBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
Xiaoxiao QinBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
Yanfen LuBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.
Yuncong YaoBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China.ORCID 0000-0001-5512-1668
Sen WangBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China. wangsen@moilab.net.
Yi ZhengBeijing Key Laboratory for Agriculture Application and New Technique, Colege of Plant Science and Technology, Bejing University of Agriculture, Bejing, 102206, China. yz@moilab.net.

Funding

Beijing University of Agriculture (BUA) Start-up fundBeijing University of Agriculture (BUA) Strat-up fund
6 · The paper itself

Abstract

The 'Red Fuji' apple (Malus domestica), is one of the most important and popular economic crops worldwide in the fruit industry. Using PacBio HiFi long reads and Hi-C reads, we assembled a high-quality haplotype-resolved genome of 'Red Fuji', with sizes of 668.7 and 668.8 Mb, and N50 sizes of 34.1 and 31.4 Mb. About 97.2% of sequences were anchored in 34 chromosomes. We annotated both haploid genomes, identifying a total of 95,439 protein-coding genes in the two haplotype genomes, with 98% functional annotation. The haplotype-resolved genome of 'Red Fuji' apple stands as a precise benchmark for an array of analyses, such as comparative genomics, transcriptomics, and allelic expression studies. This comprehensive resource is paramount in unraveling variations in allelic expression, advancing quality improvements, and refining breeding efforts.

Indexed as

Genome, PlantHaplotypesMalus

Identifiers

PMID38844753
PMCPMC11156929

What OpenQuestion holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.