Evidence map›Paper›PMID 38844612›Full record

ArticleCommunications biology2024

Fast connectivity gradient approximation: maintaining spatially fine-grained connectivity gradients while reducing computational costs.

Karl-Heinz Nenning, Ting Xu, Arielle Tambini, Alexandre R Franco, Daniel S Margulies, Stanley J Colcombe, Michael P Milham

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Karl-Heinz NenningNathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA. karl-heinz.nenning@nki.rfmh.org.ORCID 0000-0002-1073-9891
Ting XuChild Mind Institute, New York, NY, USA.ORCID 0000-0002-0065-3832
Arielle TambiniNathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA.ORCID 0000-0001-9200-9165
Alexandre R FrancoNathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA.ORCID 0000-0002-1552-1090
Daniel S MarguliesCNRS & Université de Paris, Paris, France.ORCID 0000-0002-8880-9204
Stanley J ColcombeNathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA.
Michael P MilhamNathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, USA.ORCID 0000-0003-3532-1210

Funding

Project 5: ComputationalP50MH109429 · NIMH · NATHAN S. KLINE INSTITUTE FOR PSYCH RES · PI Robert Thomas Knight · 2017 to 2026
$25.3M
The NKI Rockland Sample II: An Open Resource of Multimodal Brain, Physiology & Behavior Data from a Community Lifespan SampleR01MH124045 · NIMH · NATHAN S. KLINE INSTITUTE FOR PSYCH RES · PI COLCOMBE, STAN J, MILHAM, MICHAEL PETER · 2021 to 2025
$3.7M
Reproducible imaging-based brain growth charts for psychiatryR01MH120482 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI MILHAM, MICHAEL PETER, SATTERTHWAITE, THEODORE · 2019 to 2023
$3.5M
Mapping interindividual variation in the aging connectomeR01AG047596 · NIA · NATHAN S. KLINE INSTITUTE FOR PSYCH RES · PI COLCOMBE, STAN J, MILHAM, MICHAEL PETER · 2015 to 2019
$3.1M
An Alignment Framework For Mapping Brain Dynamics and Substrates of Human Cognition Across SpeciesRF1MH128696 · NIMH · CHILD MIND INSTITUTE, INC. · PI XU, TING · 2021 to 2021
$1.2M
NIA NIH HHS R01 AG047596NIMH NIH HHS P50 MH109429NIMH NIH HHS R01 MH120482NIMH NIH HHS R01 MH124045NIMH NIH HHS RF1 MH128696U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) P50MH109429U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R01MH120482U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R01MH124045U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) RF1MH128696
6 · The paper itself

Abstract

Brain connectome analysis suffers from the high dimensionality of connectivity data, often forcing a reduced representation of the brain at a lower spatial resolution or parcellation. This is particularly true for graph-based representations, which are increasingly used to characterize connectivity gradients, capturing patterns of systematic spatial variation in the functional connectivity structure. However, maintaining a high spatial resolution is crucial for enabling fine-grained topographical analysis and preserving subtle individual differences that might otherwise be lost. Here we introduce a computationally efficient approach to establish spatially fine-grained connectivity gradients. At its core, it leverages a set of landmarks to approximate the underlying connectivity structure at the full spatial resolution without requiring a full-scale vertex-by-vertex connectivity matrix. We show that this approach reduces computational time and memory usage while preserving informative individual features and demonstrate its application in improving brain-behavior predictions. Overall, its efficiency can remove computational barriers and enable the widespread application of connectivity gradients to capture spatial signatures of the connectome. Importantly, maintaining a spatially fine-grained resolution facilitates to characterize the spatial transitions inherent in the core concept of gradients of brain organization.

Indexed as

BrainConnectomeAdultFemaleHumansMagnetic Resonance ImagingMaleNerve Net

Identifiers

PMID38844612
PMCPMC11156950

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.