Evidence map›Paper›PMID 38842913›Full record

ArticleNucleic acids research2024

Replication protein A dynamically re-organizes on primer/template junctions to permit DNA polymerase δ holoenzyme assembly and initiation of DNA synthesis.

Jessica L Norris, Lindsey O Rogers, Kara G Pytko, Rachel L Dannenberg, Samuel Perreault, Vikas Kaushik, Sahiti Kuppa, Edwin Antony, Mark Hedglin

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Structure of the human CTF18-RFC clamp loader bound to PCNA.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jessica L NorrisDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA.
Lindsey O RogersDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA.
Kara G PytkoDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA.
Rachel L DannenbergDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA.
Samuel PerreaultDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA.
Vikas KaushikThe Saint Louis University School of Medicine, Department of Biochemistry and Molecular Biology, St. Louis, MO 63104, USA.
Sahiti KuppaThe Saint Louis University School of Medicine, Department of Biochemistry and Molecular Biology, St. Louis, MO 63104, USA.
Edwin AntonyThe Saint Louis University School of Medicine, Department of Biochemistry and Molecular Biology, St. Louis, MO 63104, USA.ORCID 0000-0002-1888-054X
Mark HedglinDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA.ORCID 0000-0003-2599-1691

Funding

Coordination of DNA Metabolism by Replication Protein AR35GM149320 · NIGMS · SAINT LOUIS UNIVERSITY · PI Edwin Antony · 2023 to 2026
$2.3M
Deciphering the progression and regulation of human translesion DNA synthesisR35GM147238 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Mark Hedglin · 2022 to 2026
$2.0M
Supplement Request for a FluorometerR01GM133967 · NIGMS · SAINT LOUIS UNIVERSITY · PI ANTONY, EDWIN · 2019 to 2023
$1.5M
Acquisition of an Optima Analytical UltracentrifugeS10OD030343 · OD · SAINT LOUIS UNIVERSITY · PI ANTONY, EDWIN · 2021 to 2021
$515k
Role of nuclear chaperones in genomic instability and carcinogenesisK00CA274696 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Sahiti Kuppa · 2023 to 2026
$377k
Role of nuclear chaperones in genomic instability and carcinogenesisF99CA274696 · NCI · SAINT LOUIS UNIVERSITY · PI KUPPA, SAHITI · 2022 to 2022
$34k
NCI NIH HHS F99 CA274696NCI NIH HHS K00 CA274696NIGMS NIH HHS R01 GM133967NIGMS NIH HHS R35 GM147238NIGMS NIH HHS R35 GM149320NIH HHS F99CA274696NIH HHS S10 OD030343
6 · The paper itself

Abstract

DNA polymerase δ (pol δ) holoenzymes, comprised of pol δ and the processivity sliding clamp, PCNA, carry out DNA synthesis during lagging strand replication, initiation of leading strand replication, and the major DNA damage repair and tolerance pathways. Pol δ holoenzymes are assembled at primer/template (P/T) junctions and initiate DNA synthesis in a stepwise process involving the major single strand DNA (ssDNA)-binding protein complex, RPA, the processivity sliding clamp loader, RFC, PCNA and pol δ. During this process, the interactions of RPA, RFC and pol δ with a P/T junction all significantly overlap. A burning issue that has yet to be resolved is how these overlapping interactions are accommodated during this process. To address this, we design and utilize novel, ensemble FRET assays that continuously monitor the interactions of RPA, RFC, PCNA and pol δ with DNA as pol δ holoenzymes are assembled and initiate DNA synthesis. Results from the present study reveal that RPA remains engaged with P/T junctions throughout this process and the RPA•DNA complexes dynamically re-organize to allow successive binding of RFC and pol δ. These results have broad implications as they highlight and distinguish the functional consequences of dynamic RPA•DNA interactions in RPA-dependent DNA metabolic processes.

Indexed as

DNADNA Polymerase IIIDNA ReplicationProliferating Cell Nuclear AntigenReplication Protein AReplication Protein CTemplates, GeneticDNA PrimersFluorescence Resonance Energy TransferHoloenzymesHumansDNADNA Polymerase IIIDNA PrimersHoloenzymesProliferating Cell Nuclear AntigenReplication Protein AReplication Protein C

Identifiers

PMID38842913
PMCPMC11260492

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.