Evidence map›Paper›PMID 38842581›Full record

ArticleMolecular cancer research : MCR2024

Intrinsic Epigenetic State of Primary Osteosarcoma Drives Metastasis.

Irtisha Singh, Nino Rainusso, Lyazat Kurenbekova, Bikesh K Nirala, Juan Dou, Abhinaya Muruganandham, Jason T Yustein

Abstract read
In one paragraph

Article in Molecular cancer research : MCR, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Irtisha SinghDepartment of Cell Biology and Genetics, College of Medicine, Texas A&M University, Bryan, Texas.ORCID 0000-0002-9460-3587
Nino RainussoDepartment of Pediatrics, Baylor College of Medicine, Texas Children's Hospital, Houston, Texas.ORCID 0000-0002-6286-0095
Lyazat KurenbekovaDepartment of Pediatrics, Baylor College of Medicine, Texas Children's Hospital, Houston, Texas.ORCID 0009-0008-7297-0344
Bikesh K NiralaWinship Cancer Institute and Aflac Cancer and Blood Disorders Center, Emory University, Atlanta, Georgia.ORCID 0000-0003-0082-1696
Juan DouWinship Cancer Institute and Aflac Cancer and Blood Disorders Center, Emory University, Atlanta, Georgia.ORCID 0009-0004-0795-6205
Abhinaya MuruganandhamDepartment of Biomedical Engineering, College of Engineering, Texas A&M University, College Station, Texas.ORCID 0009-0005-4109-4351
Jason T YusteinWinship Cancer Institute and Aflac Cancer and Blood Disorders Center, Emory University, Atlanta, Georgia.ORCID 0000-0002-2052-0527

Funding

Integrative Analysis of Change in Cognition and HealthR01AG026453 · NIA · UNIVERSITY OF VICTORIA · PI HOFER, SCOTT M. · 2007 to 2011
$2.0M
Identifying and Targeting Onocgenic MYC Enhancer Control in Pediatric TumorsR01CA215452 · NCI · BAYLOR COLLEGE OF MEDICINE · PI WESTBROOK, THOMAS · 2017 to 2021
$2.0M
Osteoinductive Nanosilicate-Based Biomaterials for In Situ Craniomaxillofacial Bone RegenerationR01DE032031 · NIDCR · TEXAS ENGINEERING EXPERIMENT STATION · PI CARL A. GREGORY, Akhilesh K. Gaharwar · 2024 to 2026
$1.7M
Impact of Emotions on Treatment Decisions About Low-Risk Thyroid CancerK08CA230204 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI PITT, SUSAN C · 2018 to 2023
$1.4M
Investigating the role Ikaros variants in multiple myeloma pathophysiology and drug sensitivityR01CA282251 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI Irtisha Singh · 2024 to 2026
$1.1M
DISSECTING AND TARGETING THE ROLE OF GALNT14 IN HIGH-RISK OSTEOSARCOMAR21CA267914 · NCI · EMORY UNIVERSITY · PI KOHLER, JENNIFER J, YUSTEIN, JASON · 2022 to 2023
$430k
Investigating Pathophysiology of Glioma Stem Cells in 3D Bioprinted Vascularized Glioblastoma ModelR21NS121945 · NINDS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI SINGH, IRTISHA · 2022 to 2023
$403k
Cancer Prevention and Research Institute of Texas (CPRIT) RP170691Cancer Prevention and Research Institute of Texas (CPRIT) RP220646Cancer Prevention and Research Institute of Texas (CPRIT) RP230204National Cancer Institute (NCI) 1R01CA21554National Cancer Institute (NCI) 1R01CA282251National Cancer Institute (NCI) 1R21CA267914National Institute of Biomedical Imaging and Bioengineering (NIBIB) 1R01EB026453National Institute of Neurological Disorders and Stroke (NINDS) 1R21NS121945NCI NIH HHS R01 CA215452NCI NIH HHS R01 CA282251NIDCR NIH HHS 1R01DE032031NINDS NIH HHS R21 NS121945
6 · The paper itself

Abstract

Osteosarcoma is the most common primary malignant bone tumor affecting the pediatric population with a high potential to metastasize. However, insights into the molecular features enabling its metastatic potential are limited. We mapped the active chromatin landscapes of osteosarcoma tumors by integrating histone H3 lysine-acetylated chromatin state (n = 13), chromatin accessibility profiles (n = 11), and gene expression (n = 13) to understand the differences in their active chromatin profiles and their impact on molecular mechanisms driving the malignant phenotypes. Primary osteosarcoma tumors from patients with metastasis (primary met) have a distinct active chromatin landscape compared with those without metastasis (localized). This difference shapes the transcriptional profile of osteosarcoma. We identified novel candidate genes, including PPP1R1B, PREX1, and IGF2BP1, that exhibit increased chromatin activity in primary met. Loss of PREX1 in primary met osteosarcoma cells significantly diminishes osteosarcoma proliferation, invasion, migration, and colony formation capacity. Differential chromatin activity in primary met is associated with genes regulating cytoskeleton organization, cellular adhesion, and extracellular matrix, suggesting their role in facilitating osteosarcoma metastasis. Chromatin profiling of tumors from metastatic lung lesions shows increased chromatin activity in genes involved in cell migration and Wnt pathway. These data demonstrate that metastatic potential is intrinsically present in primary met tumors, with cellular chromatin profiles further adapting for successful dissemination, migration, and colonization at the distal site. Implications: Our study demonstrates that metastatic potential is intrinsic to primary metastatic osteosarcoma tumors, with chromatin profiles further adapting for successful dissemination, migration, and colonization at the distal metastatic site.

Indexed as

Bone NeoplasmsEpigenesis, GeneticNeoplasm MetastasisOsteosarcomaAnimalsCell Line, TumorCell ProliferationChromatinGene Expression Regulation, NeoplasticHumansMiceChromatin

Identifiers

PMID38842581
PMCPMC13069910

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.