Evidence map›Paper›PMID 38842571›Full record

ArticlePlant molecular biology2024

Transcriptome responses of Arabidopsis to necrotrophic fungus Alternaria brassicae reveal pathways and candidate genes associated with resistance.

S Hamsa, Sivasubramanian Rajarammohan, Manisha Aswal, Manish Kumar, Jagreet Kaur

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Article in Plant molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

S HamsaDepartment of Genetics, University of Delhi, South Campus, Benito Juarez Road, New Delhi, 110021, India.
Sivasubramanian RajarammohanCentre for Genetic Manipulation of Crop Plants, University of Delhi South Campus, Benito Juarez Road, New Delhi, 110021, India.
Manisha AswalDepartment of Biophysics, University of Delhi, South Campus, Benito Juarez Road, New Delhi, 110021, India.
Manish KumarDepartment of Biophysics, University of Delhi, South Campus, Benito Juarez Road, New Delhi, 110021, India.
Jagreet KaurDepartment of Genetics, University of Delhi, South Campus, Benito Juarez Road, New Delhi, 110021, India. jagreet@south.du.ac.in.ORCID http://orcid.org/0000-0001-7994-7659

Funding

Council for Scientific and Industrial Research, India 09/045/(1637)/2019-EMR-1Department of Biotechnology, Ministry of Science and Technology, India BT/IN/Indo-UK/CGAT/12/DP/2014-15Department of Science and technology, IN IFA18-LSPA118Indian Council of Medical Research F.No.45/17/2020-TRM/BMSScience and Engineering research board, IN CRG/2020/002928University of Delhi IoE/2021/12/FRP
6 · The paper itself

Abstract

Alternaria leaf blight (ALB), caused by a necrotrophic fungus Alternaria brassicae is a serious disease of oleiferous Brassicas resulting in significant yield losses worldwide. No robust resistance against A. brassicae has been identified in the Brassicas. Natural accessions of Arabidopsis show a spectrum of responses to A. brassicae ranging from high susceptibility to complete resistance. To understand the molecular mechanisms of resistance/ susceptibility, we analysed the comparative changes in the transcriptome profile of Arabidopsis accessions with contrasting responses- at different time points post-infection. Differential gene expression, GO enrichment, pathway enrichment, and weighted gene co-expression network analysis (WGCNA) revealed reprogramming of phenylpropanoid biosynthetic pathway involving lignin, hydroxycinnamic acids, scopoletin, anthocyanin genes to be highly associated with resistance against A. brassicae. T-DNA insertion mutants deficient in the biosynthesis of coumarin scopoletin exhibited enhanced susceptibility to A. brassicae. The supplementation of scopoletin to medium or exogenous application resulted in a significant reduction in the A. brassicae growth. Our study provides new insights into the transcriptome dynamics in A. brassicae-challenged Arabidopsis and demonstrates the involvement of coumarins in plant immunity against the Brassica pathogen A. brassicae.

Indexed as

AlternariaArabidopsisDisease ResistanceGene Expression Regulation, PlantPlant DiseasesTranscriptomeArabidopsis ProteinsGene Expression ProfilingScopoletinArabidopsis ProteinsScopoletinAlternaria brassicaeArabidopsis thalianaPhenylpropanoid pathwayResistanceRNA-SequencingScopoletin

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.