Evidence map›Paper›PMID 38842447›Full record

ArticleChemical research in toxicology2024

Metabolomics Simultaneously Derives Benchmark Dose Estimates and Discovers Metabolic Biotransformations in a Rat Bioassay.

Elena Sostare, Tara J Bowen, Thomas N Lawson, Anne Freier, Xiaojing Li, Gavin R Lloyd, Lukáš Najdekr, Andris Jankevics, Thomas Smith, Dorsa Varshavi and 7 more

Abstract read
In one paragraph

Article in Chemical research in toxicology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Elena SostareMichabo Health Science Ltd., Union House, 111 New Union Street, Coventry CV1 2NT, U.K.ORCID 0000-0002-9879-0818
Tara J BowenSchool of Biosciences, University of Birmingham, Birmingham B15 2TT, U.K.
Thomas N LawsonMichabo Health Science Ltd., Union House, 111 New Union Street, Coventry CV1 2NT, U.K.ORCID 0000-0002-5915-7980
Anne FreierSchool of Biosciences, University of Birmingham, Birmingham B15 2TT, U.K.
Xiaojing LiSchool of Biosciences, University of Birmingham, Birmingham B15 2TT, U.K.ORCID 0000-0002-2796-5342
Gavin R LloydPhenome Centre Birmingham, University of Birmingham, Birmingham B15 2TT, U.K.
Lukáš NajdekrPhenome Centre Birmingham, University of Birmingham, Birmingham B15 2TT, U.K.ORCID 0000-0001-9559-5454
Andris JankevicsPhenome Centre Birmingham, University of Birmingham, Birmingham B15 2TT, U.K.ORCID 0000-0003-2095-6846
Thomas SmithPhenome Centre Birmingham, University of Birmingham, Birmingham B15 2TT, U.K.
Dorsa VarshaviPhenome Centre Birmingham, University of Birmingham, Birmingham B15 2TT, U.K.
Christian LudwigPhenome Centre Birmingham, University of Birmingham, Birmingham B15 2TT, U.K.
John K ColbourneMichabo Health Science Ltd., Union House, 111 New Union Street, Coventry CV1 2NT, U.K.
Ralf J M WeberMichabo Health Science Ltd., Union House, 111 New Union Street, Coventry CV1 2NT, U.K.
David M CrizerDivision of Translational Toxicology, National Institute of Environmental Health Sciences, Research Triangle Park NC 27709, North Carolina, United States.
Scott S AuerbachDivision of Translational Toxicology, National Institute of Environmental Health Sciences, Research Triangle Park NC 27709, North Carolina, United States.
John R BucherDivision of Translational Toxicology, National Institute of Environmental Health Sciences, Research Triangle Park NC 27709, North Carolina, United States.
Mark R ViantMichabo Health Science Ltd., Union House, 111 New Union Street, Coventry CV1 2NT, U.K.ORCID 0000-0001-5898-4119

Funding

Novel Tools and Approaches Research ProgramZIAES103378 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI CRIZER, DAVID · 2022 to 2025
$11.2M
Medical Research Council
6 · The paper itself

Abstract

Benchmark dose (BMD) modeling estimates the dose of a chemical that causes a perturbation from baseline. Transcriptional BMDs have been shown to be relatively consistent with apical end point BMDs, opening the door to using molecular BMDs to derive human health-based guidance values for chemical exposure. Metabolomics measures the responses of small-molecule endogenous metabolites to chemical exposure, complementing transcriptomics by characterizing downstream molecular phenotypes that are more closely associated with apical end points. The aim of this study was to apply BMD modeling to in vivo metabolomics data, to compare metabolic BMDs to both transcriptional and apical end point BMDs. This builds upon our previous application of transcriptomics and BMD modeling to a 5-day rat study of triphenyl phosphate (TPhP), applying metabolomics to the same archived tissues. Specifically, liver from rats exposed to five doses of TPhP was investigated using liquid chromatography-mass spectrometry and

Indexed as

BiotransformationLiverMetabolomicsAnimalsBenchmarkingDose-Response Relationship, DrugMaleOrganophosphatesRatsRats, Sprague-DawleyOrganophosphates

Identifiers

PMID38842447
PMCPMC11187623

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.