Evidence map›Paper›PMID 38842420›Full record

ArticleThe Plant cell2024

Complementary environmental analysis and functional characterization of lower glycolysis-gluconeogenesis in the diatom plastid.

Richard G Dorrell, Youjun Zhang, Yue Liang, Nolwenn Gueguen, Tomomi Nonoyama, Dany Croteau, Mathias Penot-Raquin, Sandrine Adiba, Benjamin Bailleul, Valérie Gros and 6 more

Abstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Richard G DorrellInstitut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France.ORCID 0000-0001-6263-9115
Youjun ZhangDepartment of Plant Metabolomics, Center of Plant Systems Biology and Biotechnology, Plovdiv 4000, Bulgaria.ORCID 0000-0003-1052-0256
Yue LiangCenter of Deep Sea Research, Institute of Oceanology, Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao 266071, China.ORCID 0009-0000-0087-585X
Nolwenn GueguenLaboratoire de Physiologie Cellulaire et Végétale, CNRS, University Grenoble Alpes, CEA, INRAE, IRIG, 38000 Grenoble, France.ORCID 0000-0003-1818-1033
Tomomi NonoyamaInstitut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France.ORCID 0009-0007-9438-3207
Dany CroteauInstitut de Biologie Physico-Chimique (IBPC), Université PSL, Paris 75005, France.ORCID 0000-0001-9322-8634
Mathias Penot-RaquinInstitut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France.ORCID 0009-0006-8834-946X
Sandrine AdibaInstitut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France.ORCID 0000-0003-4308-2870
Benjamin BailleulInstitut de Biologie Physico-Chimique (IBPC), Université PSL, Paris 75005, France.ORCID 0000-0002-5994-8299
Valérie GrosLaboratoire de Physiologie Cellulaire et Végétale, CNRS, University Grenoble Alpes, CEA, INRAE, IRIG, 38000 Grenoble, France.ORCID 0000-0002-6082-4613
Juan José Pierella KarlusichInstitut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France.ORCID 0000-0003-1739-4424
Nathanaël ZweigInstitut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France.ORCID 0000-0002-6719-9347
Alisdair R FernieDepartment of Plant Metabolomics, Center of Plant Systems Biology and Biotechnology, Plovdiv 4000, Bulgaria.ORCID 0000-0001-9000-335X
Juliette JouhetLaboratoire de Physiologie Cellulaire et Végétale, CNRS, University Grenoble Alpes, CEA, INRAE, IRIG, 38000 Grenoble, France.ORCID 0000-0002-4402-2194
Eric MaréchalLaboratoire de Physiologie Cellulaire et Végétale, CNRS, University Grenoble Alpes, CEA, INRAE, IRIG, 38000 Grenoble, France.ORCID 0000-0002-0060-1696
Chris BowlerInstitut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France.ORCID 0000-0003-3835-6187

Funding

ANR ANR-19-CE20-0020ANR ANR-21-CE02-0014-01Ecoles Universitaires de Recherche ANR-17-EURE-0003European Regional Development Fund 10-LABX-0049European Research CouncilEuropean Union's Horizon 2020 715579European Union's Horizon 2020 739582European Union's Horizon 2020 835067FRANCE GENOMIQUE ANR-10-INBS-09-08French Facility for Global Environment ANR-11-BTBR-0008MEMO LIFE ANR-10-LABX-54PEPR AlgAdvance 22-PEBB-0002PSL Research University ANR-11-IDEX-0001-02University Grenoble Alpes
6 · The paper itself

Abstract

Organic carbon fixed in chloroplasts through the Calvin-Benson-Bassham Cycle can be diverted toward different metabolic fates, including cytoplasmic and mitochondrial respiration, gluconeogenesis, and synthesis of diverse plastid metabolites via the pyruvate hub. In plants, pyruvate is principally produced via cytoplasmic glycolysis, although a plastid-targeted lower glycolytic pathway is known to exist in non-photosynthetic tissue. Here, we characterized a lower plastid glycolysis-gluconeogenesis pathway enabling the direct interconversion of glyceraldehyde-3-phosphate and phospho-enol-pyruvate in diatoms, ecologically important marine algae distantly related to plants. We show that two reversible enzymes required to complete diatom plastid glycolysis-gluconeogenesis, Enolase and bis-phosphoglycerate mutase (PGAM), originated through duplications of mitochondria-targeted respiratory isoforms. Through CRISPR-Cas9 mutagenesis, integrative 'omic analyses, and measured kinetics of expressed enzymes in the diatom Phaeodactylum tricornutum, we present evidence that this pathway diverts plastid glyceraldehyde-3-phosphate into the pyruvate hub, and may also function in the gluconeogenic direction. Considering experimental data, we show that this pathway has different roles dependent in particular on day length and environmental temperature, and show that the cpEnolase and cpPGAM genes are expressed at elevated levels in high-latitude oceans where diatoms are abundant. Our data provide evolutionary, meta-genomic, and functional insights into a poorly understood yet evolutionarily recurrent plastid metabolic pathway.

Indexed as

DiatomsGluconeogenesisGlycolysisPlastidsPhylogeny

Identifiers

PMID38842420
PMCPMC11371179

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.