Evidence map›Paper›PMID 38842134›Full record

ArticleJournal of cellular and molecular medicine2024

Integrative bioinformatics approach yields a novel gene expression risk model for prognosis and progression prediction in prostate cancer.

Yunyan Zhang, Zhuolin Liu, Liu Yu, Aoyu Fan, Yunpeng Li, Xiaobo Li, Wei Chen

Abstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yunyan ZhangDepartment of Urology, Zhongshan Hospital, Fudan University, Shanghai, China.ORCID 0000-0002-8106-4166
Zhuolin LiuSchool of Basic Medical Sciences, Fudan University, Shanghai, China.ORCID 0000-0001-8897-1685
Liu YuSchool of Basic Medical Sciences, Fudan University, Shanghai, China.
Aoyu FanDepartment of Urology, Zhongshan Hospital, Fudan University, Shanghai, China.
Yunpeng LiDepartment of Urology, Zhongshan Hospital, Fudan University, Shanghai, China.
Xiaobo LiSchool of Basic Medical Sciences, Fudan University, Shanghai, China.
Wei ChenDepartment of Urology, Zhongshan Hospital, Fudan University, Shanghai, China.ORCID 0000-0002-2139-1368

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prostate cancer (PCa), a prevalent malignancy among elderly males, exhibits a notable rate of advancement, even when subjected to conventional androgen deprivation therapy or chemotherapy. An effective progression prediction model would prove invaluable in identifying patients with a higher progression risk. Using bioinformatics strategies, we integrated diverse data sets of PCa to construct a novel risk model predicated on gene expression and progression-free survival (PFS). The accuracy of the model was assessed through validation using an independent data set. Eight genes were discerned as independent prognostic factors and included in the prediction model. Patients assigned to the high-risk cohort demonstrated a diminished PFS, and the areas under the curve of our model in the validation set for 1-year, 3-year, and 5-year PFS were 0.9325, 0.9041 and 0.9070, respectively. Additionally, through the application of single-cell RNA sequencing to two castration-related prostate cancer (CRPC) samples and two hormone-related prostate cancer (HSPC) samples, we discovered that luminal cells within CRPC exhibited an elevated risk score. Subsequent molecular biology experiments corroborated our findings, illustrating heightened SYK expression levels within tumour tissues and its contribution to cancer cell migration. We found that the knockdown of SYK could inhibit migration in PCa cells. Our progression-related risk model demonstrated the potential prognostic value of SYK and indicated its potential as a target for future diagnosis and treatment strategies in PCa management.

Indexed as

Computational BiologyDisease ProgressionGene Expression Regulation, NeoplasticProstatic NeoplasmsBiomarkers, TumorCell Line, TumorGene Expression ProfilingHumansMalePrognosisRisk FactorsBiomarkers, Tumorprogression‐related genesprostate cancersingle‐cell RNA‐seq analysisSYK

Identifiers

PMID38842134
PMCPMC11154836

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.