Evidence map›Paper›PMID 38841800›Full record

ArticleHaematologica2024

Genome-scale clustered regularly interspaced short palindromic repeats screen identifies nucleotide metabolism as an actionable therapeutic vulnerability in diffuse large B-cell lymphoma.

Nicholas Davies, Tegan Francis, Ceri Oldreive, Maria Azam, Jordan Wilson, Philip J Byrd, Megan Burley, Archana Sharma-Oates, Peter Keane, Sael Alatawi and 18 more

Abstract read
In one paragraph

Article in Haematologica, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Dual cancers in Ataxia-Telangiectasia: a case report and literature review.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2025
    Review
  2. AHaematologica · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Nicholas DaviesInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Tegan FrancisInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Ceri OldreiveInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Maria AzamInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Jordan WilsonInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Philip J ByrdInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Megan BurleyInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Archana Sharma-OatesSchool of Biosciences, University of Birmingham, Birmingham.
Peter KeaneInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Sael AlatawiInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK; Department of Medical Laboratory Technology, Faculty of Applied Medical Sciences, University of Tabuk, Tabuk.
Martin R HiggsInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Zbigniew RudzkiDepartment of Histopathology, University Hospitals Birmingham NHS Foundation Trust, Birmingham.
Maha IbrahimInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK; South Egypt Cancer Institute, Assiut University, Egypt.
Tracey PerryInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Angelo AgathanggelouInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Anne-Marie HewittInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Edward SmithInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Constanze BoniferInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Mark O'ConnorBioscience Oncology RandD, AstraZeneca, Cambridge.
Josep V FormentBioscience Oncology RandD, AstraZeneca, Cambridge.
Paul G MurraySchool of Medicine, Bernal Institute, Health Research Institute and LDCRC, University of Limerick, Limerick, Ireland.
Eanna FennellSchool of Medicine, Bernal Institute, Health Research Institute and LDCRC, University of Limerick, Limerick, Ireland.
Gemma KellyBlood Cells and Bood Cancer Division, The Walter and Eliza Hall Institute of Medical Research, Victoria.
Catherine ChangBlood Cells and Bood Cancer Division, The Walter and Eliza Hall Institute of Medical Research, Victoria.
Grant S StewartInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham.
Tatjana StankovicInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham. t.stankovic@bham.ac.uk.
Marwan KwokInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK; Centre for Clinical Haematology, Queen Elizabeth Hospital Birmingham, Birmingham. m.kwok@bham.ac.uk.
Alexander Malcolm TaylorInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham. a.m.r.taylor@bham.ac.uk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diffuse large B-cell lymphoma (DLBCL) is the most common malignancy that develops in patients with ataxia-telangiectasia, a cancer-predisposing inherited syndrome characterized by inactivating germline ATM mutations. ATM is also frequently mutated in sporadic DLBCL. To investigate lymphomagenic mechanisms and lymphoma-specific dependencies underlying defective ATM, we applied RNA sequencing and genome-scale loss-of-function clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 screens to systematically interrogate B-cell lymphomas arising in a novel murine model (Atm-/-nu-/-) with constitutional Atm loss, thymic aplasia but residual T-cell populations. Atm-/-nu-/- lymphomas, which phenotypically resemble either activated B-cell-like or germinal center B-cell-like DLBCL, harbor a complex karyotype, and are characterized by MYC pathway activation. In Atm-/-nu-/- lymphomas, we discovered nucleotide biosynthesis as a MYC-dependent cellular vulnerability that can be targeted through the synergistic nucleotide-depleting actions of mycophenolate mofetil (MMF) and the WEE1 inhibitor, adavosertib (AZD1775). The latter is mediated through a synthetically lethal interaction between RRM2 suppression and MYC dysregulation that results in replication stress overload in Atm-/-nu-/- lymphoma cells. Validation in cell line models of human DLBCL confirmed the broad applicability of nucleotide depletion as a therapeutic strategy for MYC-driven DLBCL independent of ATM mutation status. Our findings extend current understanding of lymphomagenic mechanisms underpinning ATM loss and highlight nucleotide metabolism as a targetable therapeutic vulnerability in MYC-driven DLBCL.

Indexed as

Ataxia Telangiectasia Mutated ProteinsLymphoma, Large B-Cell, DiffuseAnimalsCell Line, TumorClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsDisease Models, AnimalHumansMiceMice, KnockoutNucleotidesAtaxia Telangiectasia Mutated ProteinsNucleotides

Identifiers

PMID38841800
PMCPMC11609810

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.