Evidence map›Paper›PMID 38839766›Full record

ArticleNature communications2024

A candidate sex determination locus in amphibians which evolved by structural variation between X- and Y-chromosomes.

Heiner Kuhl, Wen Hui Tan, Christophe Klopp, Wibke Kleiner, Baturalp Koyun, Mitica Ciorpac, Romain Feron, Martin Knytl, Werner Kloas, Manfred Schartl and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. GWAS-Identified SNPs and Candidate Genes Influencing Sex in Loach (Animals : an open access journal from MDPI · 2026
    Article
  4. Review
  5. Article
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  12. Article
  13. Review
  14. Article
  15. Homology in Sex Determination in Two Distant Spiny Frogs,Animals : an open access journal from MDPI · 2024
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Heiner Kuhl *Leibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Müggelseedamm 301 & 310, 12587, Berlin, Germany.ORCID http://orcid.org/0000-0001-7623-9227
Wen Hui Tan *Department of Biological Sciences and Centre for Bioimaging Sciences, National University of Singapore, 14 Science Drive 4, Block S1A, Level 6, Singapore, 117543, Singapore.ORCID http://orcid.org/0000-0002-7576-3198
Christophe KloppSIGENAE, Plate-forme Bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRAe, 31326, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0001-7126-5477
Wibke KleinerLeibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Müggelseedamm 301 & 310, 12587, Berlin, Germany.ORCID http://orcid.org/0000-0002-8016-7972
Baturalp KoyunLeibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Müggelseedamm 301 & 310, 12587, Berlin, Germany.ORCID http://orcid.org/0009-0007-7543-7732
Mitica CiorpacDanube Delta National Institute for Research and Development, Tulcea, 820112, Romania.ORCID http://orcid.org/0000-0001-5374-0908
Romain FeronDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0001-5893-6184
Martin KnytlDepartment of Cell Biology, Faculty of Science, Charles University, Viničná 7, Prague, 12843, Czech Republic.ORCID http://orcid.org/0000-0002-6325-6957
Werner KloasLeibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Müggelseedamm 301 & 310, 12587, Berlin, Germany.ORCID http://orcid.org/0000-0001-8905-183X
Manfred SchartlDevelopmental Biochemistry, Biocenter, University of Wuerzburg, Am Hubland, 97074, Wuerzburg, Germany.ORCID http://orcid.org/0000-0001-9882-5948
Christoph WinklerDepartment of Biological Sciences and Centre for Bioimaging Sciences, National University of Singapore, 14 Science Drive 4, Block S1A, Level 6, Singapore, 117543, Singapore. cwinkler@nus.edu.sg.ORCID http://orcid.org/0000-0003-4688-6241
Matthias StöckLeibniz-Institute of Freshwater Ecology and Inland Fisheries, IGB, Müggelseedamm 301 & 310, 12587, Berlin, Germany. matthias.stoeck@igb-berlin.de.ORCID http://orcid.org/0000-0003-4888-8371

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) STO493/8EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 825753 (ERGO)
6 · The paper itself

Abstract

Most vertebrates develop distinct females and males, where sex is determined by repeatedly evolved environmental or genetic triggers. Undifferentiated sex chromosomes and large genomes have caused major knowledge gaps in amphibians. Only a single master sex-determining gene, the dmrt1-paralogue (dm-w) of female-heterogametic clawed frogs (Xenopus; ZW♀/ZZ♂), is known across >8740 species of amphibians. In this study, by combining chromosome-scale female and male genomes of a non-model amphibian, the European green toad, Bufo(tes) viridis, with ddRAD- and whole genome pool-sequencing, we reveal a candidate master locus, governing a male-heterogametic system (XX♀/XY♂). Targeted sequencing across multiple taxa uncovered structural X/Y-variation in the 5'-regulatory region of the gene bod1l, where a Y-specific non-coding RNA (ncRNA-Y), only expressed in males, suggests that this locus initiates sex-specific differentiation. Developmental transcriptomes and RNA in-situ hybridization show timely and spatially relevant sex-specific ncRNA-Y and bod1l-gene expression in primordial gonads. This coincided with differential H3K4me-methylation in pre-granulosa/pre-Sertoli cells, pointing to a specific mechanism of amphibian sex determination.

Indexed as

Sex Determination ProcessesX ChromosomeY ChromosomeAmphibiansAnimalsEvolution, MolecularFemaleGenomeMaleRNA, UntranslatedTranscription FactorsDMRT1 proteinRNA, UntranslatedTranscription Factors

Identifiers

PMID38839766
PMCPMC11153619

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.