Evidence map›Paper›PMID 38839574›Full record

ArticleChemphyschem : a European journal of chemical physics and physical chemistry2024

Effects of Clinical Mutations in the Second Coordination Sphere and Remote Regions on the Catalytic Mechanism of Non-Heme Fe(II)/2-Oxoglutarate-Dependent Aspartyl Hydroxylase AspH.

Anandhu Krishnan, Sodiq O Waheed, Sreerag Melayikandy, Ciara LaRouche, Meredith Paik, Christopher J Schofield, Tatyana G Karabencheva-Christova

Abstract read
In one paragraph

Article in Chemphyschem : a European journal of chemical physics and physical chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Impact of Secondary Sphere Hydrogen Bonds on OJournal of the American Chemical Society · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Anandhu KrishnanDepartment of Chemistry, Michigan Technological University, Houghton, MI-49931, USA.ORCID 0000-0002-0562-2832
Sodiq O WaheedDepartment of Chemistry, Michigan Technological University, Houghton, MI-49931, USA.ORCID 0000-0003-3422-4531
Sreerag MelayikandyDepartment of Chemistry, Michigan Technological University, Houghton, MI-49931, USA.
Ciara LaRoucheDepartment of Chemical Engineering, Michigan Techno, Department of Chemistry, Michigan Technological University, Houghton, MI-49931, USA.
Meredith PaikDepartment of Chemistry, Michigan Technological University, Houghton, MI-49931, USA.
Christopher J SchofieldChemistry Research Laboratory, Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, OX1 3TA, United Kingdom.ORCID 0000-0002-0290-6565
Tatyana G Karabencheva-ChristovaDepartment of Chemistry, Michigan Technological University, Houghton, MI-49931, USA.ORCID 0000-0001-8629-4377

Funding

Insights into Structure-Function Relationships of Matrix Metalloproteinase-1 from Computational and Experimental StudiesR15GM132873 · NIGMS · MICHIGAN TECHNOLOGICAL UNIVERSITY · PI KARABENCHEVA-CHRISTOVA, TATYANA · 2020 to 2023
$867k
Cancer Research UK C8717/A18245Michigan Technological University Health Research Institute (HRI)NIGMS NIH HHS R15 GM132873NIH HHS 2R15GM132873-02
6 · The paper itself

Abstract

Aspartyl/asparaginyl hydroxylase (AspH) catalyzes the post-translational hydroxylations of vital human proteins, playing an essential role in maintaining their biological functions. Single-point mutations in the Second Coordination Sphere (SCS) and long-range (LR) residues of AspH have been linked to pathological conditions such as the ophthalmologic condition Traboulsi syndrome and chronic kidney disease (CKD). Although the clinical impacts of these mutations are established, there is a critical knowledge gap regarding their specific atomistic effects on the catalytic mechanism of AspH. In this study, we report integrated computational investigations on the potential mechanistic implications of four mutant forms of human AspH with clinical importance: R735W, R735Q, R688Q, and G434V. All the mutant forms exhibited altered binding interactions with the co-substrate 2-oxoglutarate (2OG) and the main substrate in the ferric-superoxo and ferryl complexes, which are critical for catalysis, compared to the wild-type (WT). Importantly, the mutations strongly influence the energetics of the frontier molecular orbitals (FMOs) and, thereby, the activation energies for the hydrogen atom transfer (HAT) step compared to the WT AspH. Insights from our study can contribute to enzyme engineering and the development of selective modulators for WT and mutants of AspH, ultimately aiding in treating cancers, Traboulsi syndrome and, CKD.

Indexed as

Ketoglutaric AcidsMixed Function OxygenasesBiocatalysisFerrous CompoundsHumansMutationFerrous CompoundsKetoglutaric AcidsMixed Function Oxygenases

Identifiers

PMID38839574
PMCPMC12330991

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.