Evidence map›Paper›PMID 38838143›Full record

ArticleScience advances2024

How sensor Amt-like proteins integrate ammonium signals.

Tobias Pflüger, Mathias Gschell, Lin Zhang, Volodymyr Shnitsar, Annas J Zabadné, Paul Zierep, Stefan Günther, Oliver Einsle, Susana L A Andrade

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tobias PflügerFaculty of Chemistry and Pharmacy, Institute for Biochemistry, University Freiburg, Albertstr. 21, 79104 Freiburg, Germany.ORCID 0009-0005-6827-6630
Mathias GschellFaculty of Chemistry and Pharmacy, Institute for Biochemistry, University Freiburg, Albertstr. 21, 79104 Freiburg, Germany.ORCID 0009-0003-5118-7899
Lin ZhangFaculty of Chemistry and Pharmacy, Institute for Biochemistry, University Freiburg, Albertstr. 21, 79104 Freiburg, Germany.ORCID 0000-0001-5431-5006
Volodymyr ShnitsarFaculty of Chemistry and Pharmacy, Institute for Biochemistry, University Freiburg, Albertstr. 21, 79104 Freiburg, Germany.ORCID 0009-0007-6848-7651
Annas J ZabadnéFaculty of Chemistry and Pharmacy, Institute for Biochemistry, University Freiburg, Albertstr. 21, 79104 Freiburg, Germany.ORCID 0000-0002-9079-0311
Paul ZierepFaculty of Chemistry and Pharmacy, Institute for Pharmaceutical Sciences, University Freiburg, Hermann-Herder-Str. 9, 79104 Freiburg, Germany.ORCID 0000-0003-2982-388X
Stefan GüntherFaculty of Chemistry and Pharmacy, Institute for Pharmaceutical Sciences, University Freiburg, Hermann-Herder-Str. 9, 79104 Freiburg, Germany.ORCID 0000-0003-3744-189X
Oliver EinsleFaculty of Chemistry and Pharmacy, Institute for Biochemistry, University Freiburg, Albertstr. 21, 79104 Freiburg, Germany.ORCID 0000-0001-8722-2893
Susana L A AndradeFaculty of Chemistry and Pharmacy, Institute for Biochemistry, University Freiburg, Albertstr. 21, 79104 Freiburg, Germany.ORCID 0000-0003-2267-8499

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Unlike aquaporins or potassium channels, ammonium transporters (Amts) uniquely discriminate ammonium from potassium and water. This feature has certainly contributed to their repurposing as ammonium receptors during evolution. Here, we describe the ammonium receptor Sd-Amt1, where an Amt module connects to a cytoplasmic diguanylate cyclase transducer module via an HAMP domain. Structures of the protein with and without bound ammonium were determined to 1.7- and 1.9-Ångstrom resolution, depicting the ON and OFF states of the receptor and confirming the presence of a binding site for two ammonium cations that is pivotal for signal perception and receptor activation. The transducer domain was disordered in the crystals, and an AlphaFold2 prediction suggests that the helices linking both domains are flexible. While the sensor domain retains the trimeric fold formed by all Amt family members, the HAMP domains interact as pairs and serve to dimerize the transducer domain upon activation.

Indexed as

Ammonium CompoundsCation Transport ProteinsAmino Acid SequenceBinding SitesCrystallography, X-RayModels, MolecularProtein BindingProtein DomainsSignal TransductionAmmonium CompoundsCation Transport Proteins

Identifiers

PMID38838143
PMCPMC11152129

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.