Evidence map›Paper›PMID 38834912›Full record

ArticleNature structural & molecular biology2024

XIST dampens X chromosome activity in a SPEN-dependent manner during early human development.

Charbel Alfeghaly, Gaël Castel, Emmanuel Cazottes, Madeleine Moscatelli, Eva Moinard, Miguel Casanova, Juliette Boni, Kasturi Mahadik, Jenna Lammers, Thomas Freour and 8 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
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  5. Mechanisms of human germ cell development.Nature reviews. Molecular cell biology · 2026
    Review
  6. Remodeling ofScience advances · 2026
    Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Compensation of gene dosage on the mammalian X.Development (Cambridge, England) · 2024
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Charbel AlfeghalyEpigenetics and Cell Fate, CNRS, Université Paris Cité, Paris, France.ORCID http://orcid.org/0000-0002-3189-900X
Gaël CastelEpigenetics and Cell Fate, CNRS, Université Paris Cité, Paris, France.ORCID http://orcid.org/0000-0002-7563-1179
Emmanuel CazottesEpigenetics and Cell Fate, CNRS, Université Paris Cité, Paris, France.ORCID http://orcid.org/0000-0002-9583-2816
Madeleine MoscatelliEpigenetics and Cell Fate, CNRS, Université Paris Cité, Paris, France.
Eva MoinardCenter for Research in Transplantation and Translational Immunology (CR2TI), CHU Nantes, Inserm, Nantes Université, Nantes, France.ORCID http://orcid.org/0009-0003-8869-0455
Miguel CasanovaEpigenetics and Cell Fate, CNRS, Université Paris Cité, Paris, France.
Juliette BoniEpigenetics and Cell Fate, CNRS, Université Paris Cité, Paris, France.
Kasturi MahadikEpigenetics and Cell Fate, CNRS, Université Paris Cité, Paris, France.
Jenna LammersService de Biologie de la Reproduction, CHU Nantes, Nantes Université, Nantes, France.
Thomas FreourService de Biologie de la Reproduction, CHU Nantes, Nantes Université, Nantes, France.ORCID http://orcid.org/0000-0002-7243-7709
Louis ChauviereEpigenetics and Cell Fate, CNRS, Université Paris Cité, Paris, France.
Carla PiquerasEpigenetics and Cell Fate, CNRS, Université Paris Cité, Paris, France.
Ruben BoersDepartment of Developmental Biology, Erasmus University Medical Center, Rotterdam, Netherlands.
Joachim BoersDepartment of Developmental Biology, Erasmus University Medical Center, Rotterdam, Netherlands.
Joost GribnauDepartment of Developmental Biology, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID http://orcid.org/0000-0001-5645-4691
Laurent DavidCenter for Research in Transplantation and Translational Immunology (CR2TI), CHU Nantes, Inserm, Nantes Université, Nantes, France.
Jean-François OuimetteEpigenetics and Cell Fate, CNRS, Université Paris Cité, Paris, France.
Claire RougeulleEpigenetics and Cell Fate, CNRS, Université Paris Cité, Paris, France. claire.rougeulle@u-paris.fr.ORCID http://orcid.org/0000-0003-3861-4940

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

XIST (X-inactive specific transcript) long noncoding RNA (lncRNA) is responsible for X chromosome inactivation (XCI) in placental mammals, yet it accumulates on both X chromosomes in human female preimplantation embryos without triggering X chromosome silencing. The XACT (X-active coating transcript) lncRNA coaccumulates with XIST on active X chromosomes and may antagonize XIST function. Here, we used human embryonic stem cells in a naive state of pluripotency to assess the function of XIST and XACT in shaping the X chromosome chromatin and transcriptional landscapes during preimplantation development. We show that XIST triggers the deposition of polycomb-mediated repressive histone modifications and dampens the transcription of most X-linked genes in a SPEN-dependent manner, while XACT deficiency does not significantly affect XIST activity or X-linked gene expression. Our study demonstrates that XIST is functional before XCI, confirms the existence of a transient process of X chromosome dosage compensation and reveals that XCI and dampening rely on the same set of factors.

Indexed as

Chromosomes, Human, XRNA, Long NoncodingX Chromosome InactivationChromatinDosage Compensation, GeneticEmbryonic DevelopmentFemaleGene Expression Regulation, DevelopmentalGenes, X-LinkedHuman Embryonic Stem CellsHumansChromatinRNA, Long NoncodingXIST non-coding RNA

Identifiers

PMID38834912
PMCPMC11479943

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.