Evidence map›Paper›PMID 38834867›Full record

ArticleHeredity2024

Why we thrive beneath a northern sky - genomic signals of selection in apple for adaptation to northern Sweden.

J Skytte Af Sätra, L Garkava-Gustavsson, P K Ingvarsson

Abstract read
In one paragraph

Article in Heredity, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

J Skytte Af SätraDepartment of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden. jonas.skytte.af.satra@slu.se.ORCID 0000-0002-2827-4842
L Garkava-GustavssonDepartment of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.
P K IngvarssonDepartment of Plant Biology, Swedish University of Agricultural Sciences, Uppsala, Sweden.ORCID 0000-0001-9225-7521

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Good understanding of the genomic regions underlying adaptation of apple to boreal climates is needed to facilitate efficient breeding of locally adapted apple cultivars. Proper infrastructure for phenotyping and evaluation is essential for identification of traits responsible for adaptation, and dissection of their genetic composition. However, such infrastructure is costly and currently not available for the boreal zone of northern Sweden. Therefore, we used historical pomological data on climate adaptation of 59 apple cultivars and whole genome sequencing to identify genomic regions that have undergone historical selection among apple cultivars recommended for cultivation in northern Sweden. We found the apple collection to be composed of two ancestral groups that are largely concordant with the grouping into 'hardy' and 'not hardy' cultivars based on the pomological literature. Using a number of genome-wide scans for signals of selection, we obtained strong evidence of positive selection at a genomic region around 29 Mb

Indexed as

Genome, PlantMalusPolymorphism, Single NucleotideSelection, GeneticAdaptation, PhysiologicalClimateGenetics, PopulationGenomicsGenotypeHaplotypesPhenotypePlant BreedingSweden

Identifiers

PMID38834867
PMCPMC11286948

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.