Evidence map›Paper›PMID 38834747›Full record

ArticleNature methods2024

Effects and avoidance of photoconversion-induced artifacts in confocal and STED microscopy.

Anindita Dasgupta, Agnes Koerfer, Boštjan Kokot, Iztok Urbančič, Christian Eggeling, Pablo Carravilla

Abstract read
In one paragraph

Article in Nature methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anindita DasguptaInstitute for Applied Optics and Biophysics, Friedrich Schiller University Jena, Jena, Germany.ORCID http://orcid.org/0000-0003-2126-1333
Agnes KoerferInstitute for Applied Optics and Biophysics, Friedrich Schiller University Jena, Jena, Germany.
Boštjan KokotJožef Stefan Institute, Ljubljana, Slovenia.
Iztok UrbančičJožef Stefan Institute, Ljubljana, Slovenia.ORCID http://orcid.org/0000-0003-3603-6585
Christian EggelingInstitute for Applied Optics and Biophysics, Friedrich Schiller University Jena, Jena, Germany. christian.eggeling@uni-jena.de.ORCID http://orcid.org/0000-0002-3698-5599
Pablo CarravillaLeibniz Institute of Photonic Technology e.V., member of the Leibniz Centre for Photonics in Infection Research (LPI), Jena, Germany. pablo.carravilla@ki.se.ORCID http://orcid.org/0000-0001-6592-7630

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 13N15956Deutsche Forschungsgemeinschaft (German Research Foundation) 316213987Deutsche Forschungsgemeinschaft (German Research Foundation) 390713860Deutsche Forschungsgemeinschaft (German Research Foundation) 44711651EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) MSCA-IF 892232Javna Agencija za Raziskovalno Dejavnost RS (Slovenian Research Agency) J7-2596Javna Agencija za Raziskovalno Dejavnost RS (Slovenian Research Agency) P1-0060Karolinska Institutet (Karolinska Institute) KI-KIRI 2022-02535Leibniz-Gemeinschaft (Leibniz Association) PNEUTHERAMedical Research Council MC_UU_00008/9Medical Research Council MC_UU_12010/9
6 · The paper itself

Abstract

Fluorescence microscopy is limited by photoconversion due to continuous illumination, which results in not only photobleaching but also conversion of fluorescent molecules into species of different spectral properties through photoblueing. Here, we determined different fluorescence parameters of photoconverted products for various fluorophores under standard confocal and stimulated emission depletion (STED) microscopy conditions. We observed changes in both fluorescence spectra and lifetimes that can cause artifacts in quantitative measurements, which can be avoided by using exchangeable dyes.

Indexed as

ArtifactsMicroscopy, ConfocalMicroscopy, FluorescenceFluorescent DyesPhotobleachingFluorescent Dyes

Identifiers

PMID38834747
PMCPMC11543600

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.