Evidence map›Paper›PMID 38831286›Full record

ArticleBMC infectious diseases2024

Prevalence of the CRISPR-cas system and its association with antibiotic resistance in clinical Klebsiella pneumoniae isolates.

Hiva Kadkhoda, Pourya Gholizadeh, Reza Ghotaslou, Tahereh Pirzadeh, Mohammad Ahangarzadeh Rezaee, Edris Nabizadeh, Hadi Feizi, Hossein Samadi Kafil, Mohammad Aghazadeh

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Article in BMC infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hiva KadkhodaStudent Research Committee, Tabriz University of Medical Sciences, Tabriz, Iran.
Pourya GholizadehDigestive Disease Research Center, Ardabil University of Medical Sciences, Ardabil, Iran.
Reza GhotaslouDepartment of Medical Microbiology, Faculty of Medicine, Tabriz University of Medical Sciences, Tabriz, Iran.
Tahereh PirzadehDepartment of Medical Microbiology, Faculty of Medicine, Tabriz University of Medical Sciences, Tabriz, Iran.
Mohammad Ahangarzadeh RezaeeDepartment of Medical Microbiology, Faculty of Medicine, Tabriz University of Medical Sciences, Tabriz, Iran.
Edris NabizadehStudent Research Committee, Tabriz University of Medical Sciences, Tabriz, Iran.
Hadi FeiziStudent Research Committee, Tabriz University of Medical Sciences, Tabriz, Iran.
Hossein Samadi KafilDrug Applied Research Center, Tabriz University of Medical Sciences, Tabriz, Iran. h.s.kafil@gmail.com.
Mohammad AghazadehImmunology Research Center, Tabriz University of Medical Sciences, Tabriz, Iran. aghazadehm@tbzmed.ac.ir.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND OBJECTIVE(S): CRISPR-Cas is a prokaryotic adaptive immune system that protects bacteria and archaea against mobile genetic elements (MGEs) such as bacteriophages plasmids, and transposons. In this study, we aimed to assess the prevalence of the CRISPR-Cas systems and their association with antibiotic resistance in one of the most challenging bacterial pathogens, Klebsiella pneumoniae. MATERIALS AND

methodsA total of 105 K. pneumoniae isolates were collected from various clinical infections. Extended-spectrum β-lactamases (ESBLs) phenotypically were detected and the presence of ESBL, aminoglycoside-modifying enzymes (AME), and CRISPR-Cas system subtype genes were identified using PCR. Moreover, the diversity of the isolates was determined by enterobacterial repetitive intergenic consensus (ERIC)-PCR.

resultsPhenotypically, 41.9% (44/105) of the isolates were found to be ESBL producers. A significant inverse correlation existed between the subtype I-E CRISPR-Cas system's presence and ESBL production in K. pneumoniae isolates. Additionally, the frequency of the ESBL genes bla

conclusionThe presence of the subtype I-E CRISPR-Cas system was correlated with the antibiotic-resistant gene (ARGs). The isolates with subtype I-E CRISPR-Cas system had a lower frequency of ESBL genes and some AME genes than CRISPR-negative isolates.

Indexed as

Anti-Bacterial Agentsbeta-LactamasesCRISPR-Cas SystemsKlebsiella InfectionsKlebsiella pneumoniaeDrug Resistance, BacterialFemaleHumansMaleMicrobial Sensitivity TestsMiddle AgedPrevalenceAnti-Bacterial Agentsbeta-LactamasesCRISPR-Cas systemExtended-spectrum β-lactamasesKlebsiella pneumoniae

Identifiers

PMID38831286
PMCPMC11149351

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.