Evidence map›Paper›PMID 38831036›Full record

ArticleNature chemical biology2024

De novo design of proteins housing excitonically coupled chlorophyll special pairs.

Nathan M Ennist, Shunzhi Wang, Madison A Kennedy, Mariano Curti, George A Sutherland, Cvetelin Vasilev, Rachel L Redler, Valentin Maffeis, Saeed Shareef, Anthony V Sica and 21 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Next Generation Hosts for Protein Recognition, Assembly and More.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Review
  2. De Novo Design of Near-Infrared Fluorescence-Activating Proteins.Journal of the American Chemical Society · 2026
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. bioRxiv : the preprint server for biology · 2025
    Article
  11. Overcoming aggregation-induced quenching in DNA-assembled rhodamine dimers.Physical chemistry chemical physics : PCCP · 2025
    Article
4 · The record

Corrections and comments

  • Update of
    2023
5 · Who and what money

Authors and funding

31 authors.

Nathan M EnnistInstitute for Protein Design, University of Washington, Seattle, WA, USA. ennist@uw.edu.ORCID http://orcid.org/0000-0002-4823-9497
Shunzhi WangInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-5033-7478
Madison A KennedyDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-3422-9172
Mariano CurtiInstitute of Chemical Research of Catalonia (ICIQ-CERCA), Barcelona Institute of Science and Technology (BIST), Tarragona, Spain.ORCID http://orcid.org/0000-0002-3721-4358
George A SutherlandSchool of Biosciences, University of Sheffield, Sheffield, UK.
Cvetelin VasilevSchool of Biosciences, University of Sheffield, Sheffield, UK.
Rachel L RedlerDepartment of Cell Biology and Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.
Valentin MaffeisInstitute of Chemical Research of Catalonia (ICIQ-CERCA), Barcelona Institute of Science and Technology (BIST), Tarragona, Spain.ORCID http://orcid.org/0000-0003-4672-8286
Saeed ShareefInstitute of Chemical Research of Catalonia (ICIQ-CERCA), Barcelona Institute of Science and Technology (BIST), Tarragona, Spain.ORCID http://orcid.org/0000-0002-8412-1939
Anthony V SicaDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-4234-0885
Ash Sueh HuaDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA.
Arundhati P DeshmukhDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-7901-8814
Adam P MoyerInstitute for Protein Design, University of Washington, Seattle, WA, USA.
Derrick R HicksInstitute for Protein Design, University of Washington, Seattle, WA, USA.
Avi Z SwartzInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-3846-5917
Ralph A CachoInstitute for Protein Design, University of Washington, Seattle, WA, USA.
Naia NovyInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-1587-0482
Asim K BeraInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-9473-2912
Alex KangInstitute for Protein Design, University of Washington, Seattle, WA, USA.
Banumathi SankaranMolecular Biophysics and Integrated Bioimaging, Berkeley Center for Structural Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-3266-8131
Matthew P JohnsonSchool of Biosciences, University of Sheffield, Sheffield, UK.
Amala PhadkuleDepartment of Chemistry, Purdue University, West Lafayette, IN, USA.ORCID http://orcid.org/0000-0002-6300-3167
Mike ReppertDepartment of Chemistry, Purdue University, West Lafayette, IN, USA.ORCID http://orcid.org/0000-0002-7390-3652
Damian EkiertDepartment of Cell Biology and Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-2570-0404
Gira BhabhaDepartment of Cell Biology and Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0003-0624-6178
Lance StewartInstitute for Protein Design, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-4264-5125
Justin R CaramDepartment of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0001-5126-3829
Barry L StoddardDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-2250-9601
Elisabet RomeroInstitute of Chemical Research of Catalonia (ICIQ-CERCA), Barcelona Institute of Science and Technology (BIST), Tarragona, Spain.ORCID http://orcid.org/0000-0003-3630-1617
C Neil HunterSchool of Biosciences, University of Sheffield, Sheffield, UK.ORCID http://orcid.org/0000-0003-2533-9783
David BakerInstitute for Protein Design, University of Washington, Seattle, WA, USA. dabaker@uw.edu.ORCID http://orcid.org/0000-0001-7896-6217

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Gregory L Hura · 2017 to 2026
$28.6M
Project 4: Novel reagent development to enable molecular characterizationU19AG065156 · NIA · UNIVERSITY OF WASHINGTON · PI HOOFNAGLE, ANDREW N · 2020 to 2024
$15.9M
TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Unravelling lipid trafficking for the bacterial outer membraneR35GM128777 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Damian Ekiert · 2018 to 2026
$4.1M
MegaTALS: hyperspecific reagents for targeted gene modification and correctionR01GM105691 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STODDARD, BARRY L. · 2014 to 2022
$2.7M
Biophysical and structural studies of protein and enzyme mechanism, evolution, and engineeringR35GM148166 · NIGMS · FRED HUTCHINSON CANCER CENTER · PI BARRY L. STODDARD · 2023 to 2026
$2.3M
Dual-Beam Scanning Electron Microscope for New York Structural Biology CenterS10RR029300 · NCRR · NEW YORK STRUCTURAL BIOLOGY CENTER · PI STOKES, DAVID L. · 2010 to 2010
$2.0M
Combined computational and structural studies to create novel macromolecular recognition propertiesR01GM139752 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STODDARD, BARRY L. · 2021 to 2023
$1.1M
A Pixel Array Detector System for Small Angle X-ray ScatteringS10OD018483 · OD · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CLASSEN, SCOTT · 2014 to 2014
$998k
Acquisition of Detector for JEOL 3200 FSC Electron MicroscopeS10OD019994 · OD · NEW YORK STRUCTURAL BIOLOGY CENTER · PI CARRAGHER, BRIDGET OLIVIA · 2015 to 2015
$600k
Acquisition of a Rigaku XtaLAB Synergy-R macromolecular diffraction instrumentation at Fred Hutchinson Cancer Research CenterS10OD028581 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STODDARD, BARRY L. · 2020 to 2020
$600k
DOE | Advanced Research Projects Agency - Energy (Advanced Research Projects Agency - Energy - U.S. Department of Energy) 2459-1671DOE | Office of Science (SC) DE-SC0018940 MOD03DOE | SC | Basic Energy Sciences (BES) DE-SC0022884EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 805524EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 854126EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 Marie Sklodowska-Curie Actions (H2020 Excellent Science - Marie Sklodowska-Curie Actions) 754510EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 Marie Sklodowska-Curie Actions (H2020 Excellent Science - Marie Sklodowska-Curie Actions) 801474National Science Foundation (NSF) Career Award No. 1945572National Science Foundation (NSF) DGE1762114NCRR NIH HHS S10 RR029300NIA NIH HHS U19 AG065156NIGMS NIH HHS P30 GM124169NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM105691NIGMS NIH HHS R01 GM139752NIGMS NIH HHS R35 GM128777NIGMS NIH HHS R35 GM148166NIH HHS S10 OD018483NIH HHS S10 OD019994NIH HHS S10 OD028581RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/V006630/1U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) 5U19AG065156-02
6 · The paper itself

Abstract

Natural photosystems couple light harvesting to charge separation using a 'special pair' of chlorophyll molecules that accepts excitation energy from the antenna and initiates an electron-transfer cascade. To investigate the photophysics of special pairs independently of the complexities of native photosynthetic proteins, and as a first step toward creating synthetic photosystems for new energy conversion technologies, we designed C

Indexed as

ChlorophyllCryoelectron MicroscopyCrystallography, X-RayEnergy TransferLight-Harvesting Protein ComplexesModels, MolecularPhotosynthesisProtein ConformationChlorophyllLight-Harvesting Protein Complexes

Identifiers

PMID38831036
PMCPMC11213709

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.