Evidence map›Paper›PMID 38831032›Full record

ArticleNature microbiology2024

A Marine Group A isolate relies on other growing bacteria for cell wall formation.

Taiki Katayama, Masaru K Nobu, Hiroyuki Imachi, Naoki Hosogi, Xian-Ying Meng, Kana Morinaga, Hideyoshi Yoshioka, Hiroshi A Takahashi, Yoichi Kamagata, Hideyuki Tamaki

Abstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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  6. A year of microbiology.Nature microbiology · 2024
    Article
  7. Article
  8. International journal of systematic and evolutionary microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Taiki Katayama *Research Institute for Geo-Resources and Environment, Geological Survey of Japan (GSJ), National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan. katayama.t@aist.go.jp.ORCID http://orcid.org/0000-0003-2964-7628
Masaru K Nobu *Bioproduction Research Institute, AIST, Tsukuba, Japan.ORCID http://orcid.org/0000-0002-0046-9306
Hiroyuki ImachiInstitute for Extra-Cutting-Edge Science and Technology Avant-Garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.ORCID http://orcid.org/0000-0001-6588-5055
Naoki HosogiEM Application Department, EM Business Unit, JEOL, Ltd., Akishima, Japan.
Xian-Ying MengBioproduction Research Institute, AIST, Tsukuba, Japan.
Kana MorinagaBioproduction Research Institute, AIST, Tsukuba, Japan.
Hideyoshi YoshiokaResearch Institute for Geo-Resources and Environment, Geological Survey of Japan (GSJ), National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.
Hiroshi A TakahashiResearch Institute of Earthquake and Volcano Geology, GSJ, AIST, Tsukuba, Japan.ORCID http://orcid.org/0000-0002-5580-8205
Yoichi KamagataBioproduction Research Institute, AIST, Tsukuba, Japan.ORCID http://orcid.org/0000-0001-7124-5812
Hideyuki TamakiBioproduction Research Institute, AIST, Tsukuba, Japan.ORCID http://orcid.org/0000-0001-9208-1247

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most of Earth's prokaryotes live under energy limitation, yet the full breadth of strategies that enable survival under such conditions remain poorly understood. Here we report the isolation of a bacterial strain, IA91, belonging to the candidate phylum Marine Group A (SAR406 or 'Candidatus Marinimicrobia') that is unable to synthesize the central cell wall compound peptidoglycan itself. Using cultivation experiments and microscopy, we show that IA91 growth and cell shape depend on other bacteria, deriving peptidoglycan, energy and carbon from exogenous muropeptide cell wall fragments released from growing bacteria. Reliance on exogenous muropeptides is traceable to the phylum's ancestor, with evidence of vertical inheritance across several classes. This dependency may be widespread across bacteria (16 phyla) based on the absence of key peptidoglycan synthesis genes. These results suggest that uptake of exogenous cell wall components could be a relevant and potentially common survival strategy in energy-limited habitats like the deep biosphere.

Indexed as

BacteriaCell WallPeptidoglycanAquatic OrganismsCarbonEnergy MetabolismPhylogenySeawaterCarbonPeptidoglycan

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.