Evidence map›Paper›PMID 38829583›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2024

T2-FLAIR Mismatch Sign Predicts DNA Methylation Subclass and CDKN2A/B Status in IDH-Mutant Astrocytomas.

Matthew D Lee, Rajan Jain, Kristyn Galbraith, Anna Chen, Evan Lieberman, Sohil H Patel, Dimitris G Placantonakis, David Zagzag, Marissa Barbaro, Maria Del Pilar Guillermo Prieto Eibl and 3 more

Abstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. An Expanded T2-FLAIR Mismatch Phenotype in IDH-Mutant Astrocytomas.Journal of magnetic resonance imaging : JMRI · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Matthew D LeeDepartment of Radiology, NYU Grossman School of Medicine, New York, New York.ORCID 0000-0001-8816-1076
Rajan JainDepartment of Radiology, NYU Grossman School of Medicine, New York, New York.ORCID 0000-0002-4879-0457
Kristyn GalbraithDepartment of Pathology, NYU Grossman School of Medicine, New York, New York.ORCID 0000-0002-5660-866X
Anna ChenDepartment of Radiology, NYU Grossman School of Medicine, New York, New York.ORCID 0000-0002-3090-3361
Evan LiebermanDepartment of Radiology, NYU Grossman School of Medicine, New York, New York.ORCID 0009-0003-9955-8417
Sohil H PatelDepartment of Radiology, University of Virginia School of Medicine, Charlottesville, Virginia.ORCID 0000-0002-9739-4362
Dimitris G PlacantonakisDepartment of Neurosurgery, NYU Grossman School of Medicine, New York, New York.ORCID 0000-0003-1950-2978
David ZagzagDepartment of Neurosurgery, NYU Grossman School of Medicine, New York, New York.ORCID 0000-0002-2331-0613
Marissa BarbaroDepartment of Neurology, NYU Grossman School of Medicine, New York, New York.ORCID 0000-0001-5436-2371
Maria Del Pilar Guillermo Prieto EiblDepartment of Neurology, NYU Grossman School of Medicine, New York, New York.ORCID 0009-0003-5236-6012
John G GolfinosDepartment of Neurosurgery, NYU Grossman School of Medicine, New York, New York.ORCID 0000-0003-4221-0180
Daniel A OrringerDepartment of Neurosurgery, NYU Grossman School of Medicine, New York, New York.ORCID 0000-0001-6427-8376
Matija SnuderlDepartment of Pathology, NYU Grossman School of Medicine, New York, New York.ORCID 0000-0003-0752-0917

Funding

Generalizable quantitative imaging and machine learning signatures in glioblastoma, for precision diagnostics and personalized treatment: the ReSPOND consortiumR01CA269948 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Christos Davatzikos · 2022 to 2026
$3.2M
Virtual Biopsy with Tissue-level Accuracy in GliomaR01CA260705 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MALDJIAN, JOSEPH A · 2021 to 2025
$3.1M
Developmentally Regulated Enhancers and Chromatin Architecture in Human NeurogenesisR01NS124920 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Dimitris G. Placantonakis · 2022 to 2026
$2.7M
The role of GPR133 in glioblastomaR01NS102665 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PLACANTONAKIS, DIMITRIS G. · 2018 to 2022
$2.3M
Calcium dynamics and signaling in gliomaR21NS126806 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PLACANTONAKIS, DIMITRIS G. · 2022 to 2022
$466k
National Institutes of Health (NIH) R01CA260705NCI NIH HHS R01 CA260705NCI NIH HHS R01 CA269948NINDS NIH HHS R01 NS102665NINDS NIH HHS R01 NS124920NINDS NIH HHS R21 NS126806
6 · The paper itself

Abstract

purposeDNA methylation profiling stratifies isocitrate dehydrogenase (IDH)-mutant astrocytomas into methylation low- and high-grade groups. We investigated the utility of the T2-fluid-attenuated inversion recovery (T2-FLAIR) mismatch sign for predicting DNA methylation grade and cyclin-dependent kinase inhibitor 2A/B (CDKN2A/B) homozygous deletion, a molecular biomarker for grade 4 IDH-mutant astrocytomas, according to the 2021 World Health Organization classification. EXPERIMENTAL

designPreoperative MRI scans of IDH-mutant astrocytomas subclassified by DNA methylation profiling (n = 71) were independently evaluated by two radiologists for the T2-FLAIR mismatch sign. The diagnostic utility of T2-FLAIR mismatch in predicting methylation grade, CDKN2A/B status, copy number variation, and survival was analyzed.

resultsThe T2-FLAIR mismatch sign was present in 21 of 45 (46.7%) methylation low-grade and 1 of 26 (3.9%) methylation high-grade cases (P < 0.001), resulting in 96.2% specificity, 95.5% positive predictive value, and 51.0% negative predictive value for predicting low methylation grade. The T2-FLAIR mismatch sign was also significantly associated with intact CDKN2A/B status (P = 0.028) with 87.5% specificity, 86.4% positive predictive value, and 42.9% negative predictive value. Overall multivariable Cox analysis showed that retained CDKN2A/B status remained significant for progression-free survival (P = 0.01). Multivariable Cox analysis of the histologic grade 3 subset, which was nearly evenly divided by CDKN2A/B status, copy number variation, and methylation grade, showed trends toward significance for DNA methylation grade with overall survival (P = 0.045) and CDKN2A/B status with progression-free survival (P = 0.052).

conclusionsThe T2-FLAIR mismatch sign is highly specific for low methylation grade and intact CDKN2A/B in IDH-mutant astrocytomas.

Indexed as

AstrocytomaCyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16DNA MethylationIsocitrate DehydrogenaseMutationAdultAgedBiomarkers, TumorBrain NeoplasmsDNA Copy Number VariationsFemaleHumansMagnetic Resonance ImagingMaleMiddle AgedBiomarkers, TumorCDKN2A protein, humanCDKN2B protein, humanCyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16Isocitrate Dehydrogenase

Identifiers

PMID38829583
PMCPMC11326959

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.