Evidence map›Paper›PMID 38828893›Full record

ArticleJournal of clinical research in pediatric endocrinology2024

Molecular Genetic Diagnosis with Targeted Next Generation Sequencing in a Cohort of Turkish Osteogenesis Imperfecta Patients and their Genotype-phenotype Correlation

Samim Özen, Damla Gökşen, Ferda Evin, Esra Işık, Hüseyin Onay, Bilçağ Akgün, Aysun Ata, Tahir Atik, Füsun Düzcan, Ferda Özkınay and 2 more

Abstract read
In one paragraph

Article in Journal of clinical research in pediatric endocrinology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. The role of genetics and molecular mechanisms in early onset scoliosis.Journal of clinical orthopaedics and trauma · 2026
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Samim ÖzenEge University Faculty of Medicine, Department of Pediatrics, Division of Pediatric Endocrinology and Diabetes, İzmir, TurkeyORCID 0000-0001-7037-2713
Damla GökşenEge University Faculty of Medicine, Department of Pediatrics, Division of Pediatric Endocrinology and Diabetes, İzmir, Turkey
Ferda EvinBakırçay University, Çiğli Training and Research Hospital, Clinic of Pediatric Endocrinology, İzmir, TurkeyORCID 0000-0001-7168-890X
Esra IşıkEge University Faculty of Medicine, Department of Pediatrics, Division of Pediatric Genetics, İzmir, TurkeyORCID 0000-0003-2983-4183
Hüseyin OnayEge University Faculty of Medicine, Department of Medical Genetics, İzmir, TurkeyORCID 0000-0002-0584-8866
Bilçağ AkgünEge University Faculty of Medicine, Department of Medical Genetics, İzmir, TurkeyORCID 0000-0002-5220-5652
Aysun AtaEge University Faculty of Medicine, Department of Pediatrics, Division of Pediatric Endocrinology and Diabetes, İzmir, TurkeyORCID 0000-0002-6987-0923
Tahir AtikEge University Faculty of Medicine, Department of Pediatrics, Division of Pediatric Genetics, İzmir, TurkeyORCID 0000-0002-1142-3872
Füsun DüzcanTınaztepe University Faculty of Medicine, Department of Medical Genetics, İzmir, TurkeyORCID 0000-0002-3973-1404
Ferda ÖzkınayEge University Faculty of Medicine, Department of Pediatrics, Division of Pediatric Genetics, İzmir, TurkeyORCID 0000-0001-7542-7787
Şükran DarcanEge University Faculty of Medicine, Department of Pediatrics, Division of Pediatric Endocrinology and Diabetes, İzmir, TurkeyORCID 0000-0002-1330-6397
Özgür ÇoğuluEge University Faculty of Medicine, Department of Pediatrics, Division of Pediatric Genetics, İzmir, TurkeyORCID 0000-0002-9037-5599

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objective: Osteogenesis imperfecta (OI) consists of a group of phenotypically and genetically heterogeneous connective tissue disorders that share similar skeletal anomalies causing bone fragility and deformation. The aim was to investigate the molecular genetic etiology and determine the relationship between genotype and phenotype in OI patients using targeted next-generation sequencing (NGS). Methods: A targeted NGS analysis panel (Illumina TruSight One) containing genes involved in collagen/bone synthesis was performed on the Illumina Nextseq550 platform in patients with a confirmed diagnosis of OI. Results: Fifty-six patients (female/male: 25/31) from 46 different families were included. Consanguinity was noted in 15 (32.6%) families. Based on Sillence classification 18 (33.1%) were type 1 OI, 1 (1.7%) type 2, 26 (46.4%) type 3 and 11 (19.6%) type 4. Median body weight was -1.1 (-6.8, - 2.5) standard deviation scores (SDS), and height was -2.3 (-7.6, - 1.2) SDS. Bone deformity affected 30 (53.5%), while 31 (55.4%) were evaluated as mobile. Thirty-six (60.7%) had blue sclera, 13 (23.2%) had scoliosis, 12 (21.4%) had dentinogenesis imperfecta (DI), and 2 (3.6%) had hearing loss. Disease-causing variants in Conclusion: Genetic etiology was found in 38 (82.6%) of 46 families by targeted NGS analysis. Furthermore, nine new variants were identified in known OI genes which were classified as pathogenic by standard guidelines.

Indexed as

Genetic Association StudiesHigh-Throughput Nucleotide SequencingOsteogenesis ImperfectaAdolescentAdultChildChild, PreschoolCohort StudiesFemaleHumansInfantMaleMutationPhenotypeTurkeyYoung AdultCOL1A1geneticsnext-generation sequencingOsteogenesis imperfecta

Identifiers

PMID38828893
PMCPMC11629724

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.