Evidence map›Paper›PMID 38827511›Full record

ArticlemLife2024

Why and how to use the SeqCode.

William B Whitman, Maria Chuvochina, Brian P Hedlund, Konstantinos T Konstantinidis, Marike Palmer, Luis M Rodriguez-R, Iain Sutcliffe, Fengping Wang

Abstract read
In one paragraph

Article in mLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Polyphasic Characterization ofIndian journal of microbiology · 2025
    Article
  4. Review
  5. Proposal ofISME communications · 2025
    Article
  6. Review
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

William B WhitmanDepartment of Microbiology University of Georgia Athens Georgia USA.ORCID 0000-0003-1229-0423
Maria ChuvochinaSchool of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics The University of Queensland St Lucia Australia.ORCID 0000-0002-3977-6012
Brian P HedlundUniversity of Nevada Las Vegas Las Vegas Nevada USA.ORCID 0000-0001-8530-0448
Konstantinos T KonstantinidisSchool of Civil and Environmental Engineering, and School of Biological Sciences, Georgia Institute of Technology Atlanta Georgia USA.ORCID 0000-0002-0954-4755
Marike PalmerDepartment of Microbiology University of Manitoba Winnipeg Manitoba Canada.ORCID 0000-0001-8395-8465
Luis M Rodriguez-RDepartment of Microbiology and Digital Science Center (DiSC) University of Innsbruck Innsbruck Austria.ORCID 0000-0001-7603-3093
Iain SutcliffeFaculty of Health & Life Sciences Northumbria University Newcastle upon Tyne UK.ORCID 0000-0002-9036-2683
Fengping WangSchool of Oceanography, International Center for Deep Life Investigation Shanghai Jiao Tong University Shanghai China.ORCID 0000-0002-3429-8410

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The SeqCode, formally called the Code of Nomenclature of Prokaryotes Described from Sequence Data, is a new code of nomenclature in which genome sequences are the nomenclatural types for the names of prokaryotic species. While similar to the International Code of Nomenclature of Prokaryotes (ICNP) in structure and rules of priority, it does not require the deposition of type strains in international culture collections. Thus, it allows for the formation of permanent names for uncultured prokaryotes whose nearly complete genome sequences have been obtained directly from environmental DNA as well as other prokaryotes that cannot be deposited in culture collections. Because the diversity of uncultured prokaryotes greatly exceeds that of readily culturable prokaryotes, the SeqCode is the only code suitable for naming the majority of prokaryotic species. The start date of the SeqCode was January 1, 2022, and the online Registry (https://seqco.de/) was created to ensure valid publication of names. The SeqCode recognizes all names validly published under the ICNP before 2022. After that date, names validly published under the SeqCode compete with ICNP names for priority. As a result, species can have only one name, either from the SeqCode or ICNP, enabling effective communication and the creation of unified taxonomies of uncultured and cultured prokaryotes. The SeqCode is administered by the SeqCode Committee, which is comprised of the SeqCode Community and elected administrative components. Anyone with an interest in the systematics of prokaryotes is encouraged to join the SeqCode Community and participate in the development of this resource.

Indexed as

genome sequencesmetagenome‐assembled genomesnomenclatureSeqCode

Identifiers

PMID38827511
PMCPMC11139209

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.