Evidence map›Paper›PMID 38827420›Full record

ArticleVirus evolution2024

Comparative genome analysis reveals driving forces behind Monkeypox virus evolution and sheds light on the role of ATC trinucleotide motif.

Preeti Agarwal, Nityendra Shukla, Ajay Bhatia, Sahil Mahfooz, Jitendra Narayan

Abstract read
In one paragraph

Article in Virus evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Preeti AgarwalBioinformatics and Big Data, CSIR-Institute of Genomics and Integrative Biology, Mall Road, Delhi 110007, India.
Nityendra ShuklaBioinformatics and Big Data, CSIR-Institute of Genomics and Integrative Biology, Mall Road, Delhi 110007, India.
Ajay BhatiaBioinformatics and Big Data, CSIR-Institute of Genomics and Integrative Biology, Mall Road, Delhi 110007, India.
Sahil MahfoozDepartment of Industrial Microbiology, Deen Dayal Upadhyaya Gorakhpur University, Civil Lines, Gorakhpur 273009, India.
Jitendra NarayanBioinformatics and Big Data, CSIR-Institute of Genomics and Integrative Biology, Mall Road, Delhi 110007, India.ORCID https://orcid.org/0000-0002-2065-2861

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Monkeypox (MPOX), a zoonotic disease originating in Western and Central Africa in 1970, has seen a recent surge in outbreaks across 100+ countries. A comparative analysis of 404 Monkeypox virus (MPXV) genomes revealed notable changes in microsatellite abundance and density, especially within Clades I, IIa, and IIb. Each clade exhibited unique microsatellite motifs, with twenty-six conserved loci specific to MPXV, suggesting their potential as molecular markers in diagnostics. Additionally, nine genes in the MPXV genome featured ten variable hotspot microsatellite regions associated with surface protein synthesis and host control. Notably, gene OPG153, especially at the SSR locus '(ATC)n', exhibited the most pronounced variations among lineages over time and plays a role in virus pathogenesis within the host cell. These findings not only enhance our understanding of MPXV unique molecular profile but also offer valuable insights into potential pathogenic and evolutionary implications.

Indexed as

human pathogenmicrosatellitemonkeypoxmotifsrepeats

Identifiers

PMID38827420
PMCPMC11141602

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.