ArticleAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science2024
Local Large Language Models for Complex Structured Tasks.
Article in AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
8 citing papers in PubMed.
- Digital Registrar: A Schema-First Framework for Multi-Cancer Privacy-Preserving Pathology Abstraction via Local LLMs.Diagnostics (Basel, Switzerland) · 2026Article
- Context-Aware Sentence Classification of Radiology Reports Using Synthetic Data: Development and Validation Study.Journal of medical Internet research · 2026Article
- Review
- Article
- Large Language Models in Population Oncology: A Contemporary Review on the Use of Large Language Models to Support Data Collection, Aggregation, and Analysis in Cancer Care and Research.JCO clinical cancer informatics · 2025Review
- Large Language Model Architectures in Health Care: Scoping Review of Research Perspectives.Journal of medical Internet research · 2025Article
- Development and evaluation of a 4M taxonomy from nursing home staff text messages using a fine-tuned generative language model.Journal of the American Medical Informatics Association : JAMIA · 2025Article
- Leveraging Generative AI and Large Language Models: A Comprehensive Roadmap for Healthcare Integration.Healthcare (Basel, Switzerland) · 2023Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
This paper introduces an approach that combines the language reasoning capabilities of large language models (LLMs) with the benefits of local training to tackle complex language tasks. The authors demonstrate their approach by extracting structured condition codes from pathology reports. The proposed approach utilizes local, fine-tuned LLMs to respond to specific generative instructions and provide structured outputs. Over 150k uncurated surgical pathology reports containing gross descriptions, final diagnoses, and condition codes were used. Different model architectures were trained and evaluated, including LLaMA, BERT, and LongFormer. The results show that the LLaMA-based models significantly outperform BERT-style models across all evaluated metrics. LLaMA models performed especially well with large datasets, demonstrating their ability to handle complex, multi-label tasks. Overall, this work presents an effective approach for utilizing LLMs to perform structured generative tasks on domain-specific language in the medical domain.
Identifiers
38827047PMC11141822What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.