Evidence map›Paper›PMID 38826418›Full record

ArticlebioRxiv : the preprint server for biology2024

Molecular Specializations Underlying Phenotypic Differences in Inner Ear Hair Cells of Zebrafish and Mice.

Kimberlee P Giffen, Huizhan Liu, Kacey L Yamane, Yi Li, Lei Chen, Ken L Kramer, Marisa Zallocchi, David Z Z He

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Kimberlee P GiffenDepartment of Neuroscience and Regenerative Medicine, Medical College of Georgia at Augusta University, Augusta, GA, USA.ORCID 0000-0001-9332-3498
Huizhan LiuDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, USA.
Kacey L YamaneDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, USA.
Yi LiDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, USA.ORCID 0000-0002-9986-6546
Lei ChenDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, USA.
Ken L KramerDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, USA.
Marisa ZallocchiDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, USA.
David Z Z HeDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, USA.ORCID 0000-0001-8383-9634

Funding

Understanding the progression of hearing loss in an endolymphatic hydrops modelP20GM139762 · NIGMS · CREIGHTON UNIVERSITY · PI Hui Hong · 2021 to 2026
$16.1M
BIOPHYSICS AND DEVELOPMENT OF COCHLEAR OUTER HAIR CELLSR01DC004696 · NIDCD · FATHER FLANAGAN'S BOYS'HOME · PI HE, ZHI-ZHOU · 2001 to 2016
$4.2M
NIDCD NIH HHS R01 DC004696NIGMS NIH HHS P20 GM139762
6 · The paper itself

Abstract

Hair cells (HCs) are the sensory receptors of the auditory and vestibular systems in the inner ears of vertebrates that selectively transduce mechanical stimuli into electrical activity. Although all HCs have the hallmark stereocilia bundle for mechanotransduction, HCs in non-mammals and mammals differ in their molecular specialization in the apical, basolateral and synaptic membranes. HCs of non-mammals, such as zebrafish (zHCs), are electrically tuned to specific frequencies and possess an active process in the stereocilia bundle to amplify sound signals. Mammalian cochlear HCs, in contrast, are not electrically tuned and achieve amplification by somatic motility of outer HCs (OHCs). To understand the genetic mechanisms underlying differences among adult zebrafish and mammalian cochlear HCs, we compared their RNA-seq-characterized transcriptomes, focusing on protein-coding orthologous genes related to HC specialization. There was considerable shared expression of gene orthologs among the HCs, including those genes associated with mechanotransduction, ion transport/channels, and synaptic signaling. For example, both zebrafish and mouse HCs express

Indexed as

hair cellshearingmouseorthologsprestinRNA-seqtranscriptomezebrafish

Identifiers

PMID38826418
PMCPMC11142236

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.