Evidence map›Paper›PMID 38825966›Full record

ArticleMicrobiologyOpen2024

Distinct biogeographical patterns in snail gastrointestinal tract bacterial communities compared with sediment and water.

Daniel P R Herlemann, Helen Tammert, Carmen Kivistik, Kairi Käiro, Veljo Kisand

Abstract readComparative Study
In one paragraph

Article in MicrobiologyOpen, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Daniel P R HerlemannCentre for Limnology, Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu County, Estonia.ORCID 0000-0002-8100-4649
Helen TammertCentre for Limnology, Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu County, Estonia.
Carmen KivistikCentre for Limnology, Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu County, Estonia.
Kairi KäiroCentre for Limnology, Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu County, Estonia.
Veljo KisandCentre for Limnology, Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu County, Estonia.

Funding

Eesti Maaülikool P190250PKKHEesti Maaülikool P200028PKKHEesti Teadusagentuur MOBTT24Eesti Teadusagentuur PUT1389European Regional Development Fund MOBTT24Leibniz-Institut für Ostseeforschung Warnemünde Leibniz Institute for Baltic Sea Research WarnemüLeibniz-Institut für Ostseeforschung Warnemünde Shallow Water Processes and Transitions
6 · The paper itself

Abstract

The factors that influence the distribution of bacterial community composition are not well understood. The role of geographical patterns, which suggest limited dispersal, is still a topic of debate. Bacteria associated with hosts face unique dispersal challenges as they often rely on their hosts, which provide specific environments for their symbionts. In this study, we examined the effect of biogeographic distances on the bacterial diversity and composition of bacterial communities in the gastrointestinal tract of Ampullaceana balthica. We compared the effects on the host-associated bacterial community to those on bacterial communities in water and sediment. This comparison was made using 16S ribosomal RNA gene sequencing. We found that the bacterial communities we sampled in Estonia, Denmark, and Northern Germany varied between water, sediment, and the gastrointestinal tract. They also varied between countries within each substrate. This indicates that the type of substrate is a dominant factor in determining bacterial community composition. We separately analyzed the turnover rates of water, sediment, and gastrointestinal bacterial communities over increasing geographic distances. We observed that the turnover rate was lower for gastrointestinal bacterial communities compared to water bacterial communities. This implies that the composition of gastrointestinal bacteria remains relatively stable over distances, while water bacterial communities exhibit greater variability. However, the gastrointestinal tract had the lowest percentage of country-specific amplicon sequence variants, suggesting bacterial colonization from local bacterial communities. Since the overlap between the water and gastrointestinal tract was highest, it appears that the gastrointestinal bacterial community is colonized by the water bacterial community. Our study confirmed that biogeographical patterns in host-associated communities differ from those in water and sediment bacterial communities. These host-associated communities consist of numerous facultative symbionts derived from the water bacterial community.

Indexed as

BacteriaGastrointestinal TractGeologic SedimentsRNA, Ribosomal, 16SSnailsAnimalsBiodiversityDenmarkDNA, BacterialEstoniaGastrointestinal MicrobiomeGermanyPhylogenySequence Analysis, DNAWater MicrobiologyDNA, BacterialRNA, Ribosomal, 16Shabitat islandholobionthost‐associatedsymbiont

Identifiers

PMID38825966
PMCPMC11144953

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.