Evidence map›Paper›PMID 38824612›Full record

ArticleThe Plant journal : for cell and molecular biology2024

The interplay of homology-directed repair pathways in the repair of zebularine-induced DNA-protein crosslinks in Arabidopsis.

Eva Dvořák Tomaštíková, Jitka Vaculíková, Veronika Štenclová, Kateřina Kaduchová, Zuzana Pobořilová, Jan J Paleček, Ales Pecinka

Abstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Eva Dvořák TomaštíkováCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, Olomouc, 77900, Czech Republic.
Jitka VaculíkováCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, Olomouc, 77900, Czech Republic.
Veronika ŠtenclováCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, Olomouc, 77900, Czech Republic.
Kateřina KaduchováCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, Olomouc, 77900, Czech Republic.
Zuzana PobořilováCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, Olomouc, 77900, Czech Republic.
Jan J PalečekFaculty of Science, National Center for Biomolecular Research, Masaryk University, Kamenice 5, Brno, 62500, Czech Republic.ORCID 0000-0002-6223-5169
Ales PecinkaCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, Olomouc, 77900, Czech Republic.ORCID 0000-0001-9277-1766

Funding

European Regional Development Fund CZ.02.01.01/00/22_008/0004581Grantová Agentura České Republiky 22-00871SGrantová Agentura České Republiky GA23-05284SMinistry of Education Youth and Sports of the Czech Republic
6 · The paper itself

Abstract

DNA-protein crosslinks (DPCs) are highly toxic DNA lesions represented by proteins covalently bound to the DNA. Persisting DPCs interfere with fundamental genetic processes such as DNA replication and transcription. Cytidine analog zebularine (ZEB) has been shown to crosslink DNA METHYLTRANSFERASE1 (MET1). Recently, we uncovered a critical role of the SMC5/6-mediated SUMOylation in the repair of DPCs. In an ongoing genetic screen, we identified two additional candidates, HYPERSENSITIVE TO ZEBULARINE 2 and 3, that were mapped to REGULATOR OF TELOMERE ELONGATION 1 (RTEL1) and polymerase TEBICHI (TEB), respectively. By monitoring the growth of hze2 and hze3 plants in response to zebularine, we show the importance of homologous recombination (HR) factor RTEL1 and microhomology-mediated end-joining (MMEJ) polymerase TEB in the repair of MET1-DPCs. Moreover, genetic interaction and sensitivity assays showed the interdependency of SMC5/6 complex, HR, and MMEJ in the homology-directed repair of MET1-DPCs in Arabidopsis. Altogether, we provide evidence that MET1-DPC repair in plants is more complex than originally expected.

Indexed as

ArabidopsisArabidopsis ProteinsCytidineDNA DamageDNA, PlantDNA RepairRecombinational DNA RepairArabidopsis ProteinsCytidineDNA, Plantpyrimidin-2-one beta-ribofuranosideArabidopsis thalianaDNA damage repairDNA–protein crosslinkgenome stabilityreplicative stressRTEL1SMC5/6 complexTEBICHI

Identifiers

PMID38824612
PMCPMC13087486

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.