Evidence map›Paper›PMID 38824248›Full record

ArticleMolecular biology reports2024

Analysis of population structure and genetic diversity of Camellia tachangensis in Guizhou based on SNP markers.

Dejun Huang, Suzhen Niu, Dingchen Bai, Zhifei Zhao, Caiyun Li, Xiuling Deng, Yihan Wang

Abstract read
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Article in Molecular biology reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

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4citing papers in PubMed
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4 citing papers in PubMed.

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5 · Who and what money

Authors and funding

7 authors.

Dejun HuangInstitute of Tea, Guizhou university, Jiaxiu South Road, Guiyang, Guizhou, China.
Suzhen NiuInstitute of Tea, Guizhou university, Jiaxiu South Road, Guiyang, Guizhou, China. niusuzhen@163.com.
Dingchen BaiInstitute of Tea, Guizhou university, Jiaxiu South Road, Guiyang, Guizhou, China.
Zhifei ZhaoInstitute of Tea, Guizhou university, Jiaxiu South Road, Guiyang, Guizhou, China.
Caiyun LiInstitute of Tea, Guizhou university, Jiaxiu South Road, Guiyang, Guizhou, China.
Xiuling DengInstitute of Tea, Guizhou university, Jiaxiu South Road, Guiyang, Guizhou, China.
Yihan WangInstitute of Tea, Guizhou university, Jiaxiu South Road, Guiyang, Guizhou, China.

Funding

Guiyang Science and Technology Plan Project (Construction Technology Contract [2023] ·48-21)Project of the key filed project of Natural Science Foundation of Guizhou Provincial Department of education (KY [20211·042)Project of the National key R & D plan (2021YFD1200203-1)Projectofthe National Science Foundation, in PR China· (32060700)Science and Technology Plan Project of Guizhou province, in PR China ([2021] General 126)the National Guidance Foundation for Local Science and Technology Development of China (2023009)
6 · The paper itself

Abstract

backgroundCamellia tachangensis F. C. Zhang is a five-compartment species in the ovary of tea group plants, which represents the original germline of early differentiation of some tea group plants. METHODS AND

resultsIn this study, we analyzed single-nucleotide polymorphisms (SNPs) at the genome level, constructed a phylogenetic tree, analyzed the genetic diversity, and further investigated the population structure of 100 C. tachangensis accessions using the genotyping-by-sequencing (GBS) method. A total of 91,959 high-quality SNPs were obtained. Population structure analysis showed that the 100 C. tachangensis accessions clustered into three groups: YQ-1 (Village Group), YQ-2 (Forest Group) and YQ-3 (Transition Group), which was further consistent with the results of phylogenetic analysis and principal component analyses (PCA). In addition, a comparative analysis of the genetic diversity among the three populations (Forest, Village, and Transition Groups) detected the highest genetic diversity in the Transition Group and the highest differentiation between Forest and Village Groups.

conclusionsC. tachangensis plants growing in the forest had different genetic backgrounds from those growing in villages. This study provides a basis for the effective protection and utilization of C. tachangensis populations and lays a foundation for future C. tachangensis breeding.

Indexed as

CamelliaGenetic VariationPhylogenyPolymorphism, Single NucleotideChinaGenetics, PopulationGenome, PlantGenotypePrincipal Component AnalysisCamellia tachangensisGuizhou PlateauPopulation structureSNPTea

Identifiers

PMID38824248
PMCPMC11144125

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