Evidence map›Paper›PMID 38824133›Full record

ArticleNature communications2024

Inherited C-terminal TREX1 variants disrupt homology-directed repair to cause senescence and DNA damage phenotypes in Drosophila, mice, and humans.

Samuel D Chauvin, Shoichiro Ando, Joe A Holley, Atsushi Sugie, Fang R Zhao, Subhajit Poddar, Rei Kato, Cathrine A Miner, Yohei Nitta, Siddharth R Krishnamurthy and 30 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Autoinflammatory syndromes of STING and TREX1 dysfunction.The Journal of clinical investigation · 2026
    Review
  3. First case ofFrontiers in immunology · 2026
    Article
  4. bioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Samuel D Chauvin *Division of Rheumatology, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-0232-751X
Shoichiro Ando *Department of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan.
Joe A Holley *Division of Rheumatology, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Atsushi SugieDepartment of Neuroscience of Disease, Brain Research Institute, Niigata University, Niigata, Japan.ORCID http://orcid.org/0000-0002-2090-8839
Fang R ZhaoDepartment of Medicine, Washington University in Saint Louis, Saint Louis, MO, USA.ORCID http://orcid.org/0000-0002-5059-0833
Subhajit PoddarDivision of Rheumatology, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Rei KatoDepartment of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan.
Cathrine A MinerDivision of Rheumatology, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Yohei NittaDepartment of Neuroscience of Disease, Brain Research Institute, Niigata University, Niigata, Japan.ORCID http://orcid.org/0000-0002-0712-428X
Siddharth R KrishnamurthyMetaorganism Immunity Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Rie SaitoDepartment of Pathology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan.ORCID http://orcid.org/0000-0001-7294-5183
Yue NingDivision of Rheumatology, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Yuya HatanoDepartment of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan.
Sho KitaharaDepartment of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan.
Shin KoideDepartment of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan.ORCID http://orcid.org/0009-0007-7945-8880
W Alexander StinsonDepartment of Medicine, Washington University in Saint Louis, Saint Louis, MO, USA.
Jiayuan FuDivision of Rheumatology, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Nehalee SurveDivision of Rheumatology, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Lindsay KumbleDivision of Rheumatology, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Wei QianDepartment of Medicine, Washington University in Saint Louis, Saint Louis, MO, USA.
Oleksiy PolishchukDivision of Rheumatology, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Prabhakar S AndheyDepartment of Pathology and Immunology, Washington University in Saint Louis, Saint Louis, MO, USA.
Cindy ChiangDepartment of Microbiology, The University of Chicago, Chicago, IL, USA.
Guanqun LiuDepartment of Microbiology, The University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-2520-7625
Ludovic ColombeauEquipe Labellisée Ligue Contre le Cancer, Institut Curie, CNRS, INSERM, PSL Research University, Paris, France.
Raphaël RodriguezEquipe Labellisée Ligue Contre le Cancer, Institut Curie, CNRS, INSERM, PSL Research University, Paris, France.ORCID http://orcid.org/0000-0001-7668-446X
Nicolas ManelINSERM U932, Institut Curie, PSL Research University, Paris, France.ORCID http://orcid.org/0000-0002-1481-4430
Akiyoshi KakitaDepartment of Pathology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan.
Maxim N ArtyomovDepartment of Pathology and Immunology, Washington University in Saint Louis, Saint Louis, MO, USA.ORCID http://orcid.org/0000-0002-1133-4212
David C SchultzHigh-throughput Screening Core, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-7890-8815
P Toby CoatesCentral and Northern Adelaide Renal and Transplantation Service (CNARTS), The Royal Adelaide Hospital, Adelaide, South Australia, Australia.
Elisha D O RobersonDepartment of Medicine, Washington University in Saint Louis, Saint Louis, MO, USA.
Yasmine BelkaidMetaorganism Immunity Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Roger A GreenbergDepartment of Cancer Biology, Penn Center for Genome Integrity, Basser Center for BRCA, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-1326-8981
Sara CherryInstitute for Immunology and Immune Health, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-3956-6610
Michaela U GackDepartment of Microbiology, The University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-2163-2598
Tristan HardyGenetics, Repromed, Monash IVF, Dulwich, South Australia, Australia.
Osamu OnoderaDepartment of Neurology, Clinical Neuroscience Branch, Brain Research Institute, Niigata University, Niigata, Japan.ORCID http://orcid.org/0000-0003-3354-5472
Taisuke KatoDepartment of Molecular Neuroscience, Brain Science Branch, Brain Research Institute, Niigata University, Niigata, Japan. taisuke8077@bri.niigata-u.ac.jp.ORCID http://orcid.org/0000-0001-5696-7104
Jonathan J MinerDivision of Rheumatology, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA. Jonathan.Miner@PennMedicine.UPenn.edu.ORCID http://orcid.org/0000-0001-9551-2962

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007170 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BRASS, LAWRENCE F · 1985 to 2022
$54.0M
Tumor cell instrinsic DNA damage signaling to the immune responseP01CA265794 · NCI · UNIVERSITY OF PENNSYLVANIA · PI David Michael Chenoweth · 2023 to 2026
$8.5M
Mechanisms of STING-associated immunodeficiencyR01AI143982 · NIAID · WASHINGTON UNIVERSITY · PI Jonathan J Miner · 2019 to 2026
$4.6M
DNA Double Strand Break Chromatin Alterations and Genome IntegrityR01GM101149 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GREENBERG, ROGER A · 2013 to 2025
$4.0M
Role of TREX1 in age-related hereditary leukoencephalopathyR01NS131480 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI Jonathan J Miner · 2023 to 2026
$3.2M
Contributions of IRF5 to Chikungunya Viral ArthritisK08AR070918 · NIAMS · WASHINGTON UNIVERSITY · PI MINER, JONATHAN J · 2017 to 2021
$612k
Japan Agency for Medical Research and Development (AMED) 22ek0109424h0003MEXT | Japan Society for the Promotion of Science (JSPS) 18K07522MEXT | Japan Society for the Promotion of Science (JSPS) 22H00466MEXT | Japan Society for the Promotion of Science (JSPS) 22H02981NCI NIH HHS P01 CA265794NIAID NIH HHS R01 AI143982NIAMS NIH HHS K08 AR070918NIGMS NIH HHS R01 GM101149NIGMS NIH HHS T32 GM007170NINDS NIH HHS R01 NS131480Osaka Medical Research Foundation for Intractable Diseases JP21FC1007U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI143982U.S. Department of Health & Human Services | NIH | National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) K08AR070918U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R01NS131480
6 · The paper itself

Abstract

Age-related microangiopathy, also known as small vessel disease (SVD), causes damage to the brain, retina, liver, and kidney. Based on the DNA damage theory of aging, we reasoned that genomic instability may underlie an SVD caused by dominant C-terminal variants in TREX1, the most abundant 3'-5' DNA exonuclease in mammals. C-terminal TREX1 variants cause an adult-onset SVD known as retinal vasculopathy with cerebral leukoencephalopathy (RVCL or RVCL-S). In RVCL, an aberrant, C-terminally truncated TREX1 mislocalizes to the nucleus due to deletion of its ER-anchoring domain. Since RVCL pathology mimics that of radiation injury, we reasoned that nuclear TREX1 would cause DNA damage. Here, we show that RVCL-associated TREX1 variants trigger DNA damage in humans, mice, and Drosophila, and that cells expressing RVCL mutant TREX1 are more vulnerable to DNA damage induced by chemotherapy and cytokines that up-regulate TREX1, leading to depletion of TREX1-high cells in RVCL mice. RVCL-associated TREX1 mutants inhibit homology-directed repair (HDR), causing DNA deletions and vulnerablility to PARP inhibitors. In women with RVCL, we observe early-onset breast cancer, similar to patients with BRCA1/2 variants. Our results provide a mechanistic basis linking aberrant TREX1 activity to the DNA damage theory of aging, premature senescence, and microvascular disease.

Indexed as

DNA DamageExodeoxyribonucleasesPhosphoproteinsAgingAnimalsDrosophilaDrosophila melanogasterFemaleHereditary Central Nervous System Demyelinating DiseasesHumansMaleMiceMutationPhenotypeRecombinational DNA RepairRetinal DiseasesExodeoxyribonucleasesPhosphoproteinsthree prime repair exonuclease 1

Identifiers

PMID38824133
PMCPMC11144269

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.