Evidence map›Paper›PMID 38823019›Full record

ArticleCell reports2024

Quantitative trait loci mapping provides insights into the genetic regulation of dendritic cell numbers in mouse tissues.

Thiago Y Oliveira, Julia Merkenschlager, Thomas Eisenreich, Juliana Bortolatto, Kai-Hui Yao, Daniel M Gatti, Gary A Churchill, Michel C Nussenzweig, Gaëlle Breton

Abstract read
In one paragraph

Article in Cell reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Fifteen years of the Diversity Outbred mouse model: a review.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Thiago Y OliveiraLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065, USA.
Julia MerkenschlagerLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065, USA.
Thomas EisenreichLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065, USA.
Juliana BortolattoLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY 10065, USA.
Kai-Hui YaoLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065, USA.
Daniel M GattiThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Gary A ChurchillThe Jackson Laboratory, Bar Harbor, ME 04609, USA.
Michel C NussenzweigLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065, USA; Howard Hughes Medical Institute (HHMI), The Rockefeller University, New York, NY 10065, USA. Electronic address: nussen@rockefeller.edu.
Gaëlle BretonLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10065, USA. Electronic address: gbreton@rockefeller.edu.

Funding

TRANSFORMING TRANSLATIONAL SCIENCE AND EDUCATION TO BENEFIT HUMAN HEALTHUL1RR024143 · NCRR · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY · 2006 to 2011
$49.1M
Systems Genetic Analysis of Multi-parent CrossesR01GM070683 · NIGMS · JACKSON LABORATORY · PI BROMAN, KARL W, CHURCHILL, GARY A · 2004 to 2022
$6.8M
Class Switch Recombination in B LymphocytesR37AI037526 · NIAID · ROCKEFELLER UNIVERSITY · PI NUSSENZWEIG, MICHEL C · 2014 to 2023
$5.4M
Genetic determinants of myeloid cell homeostasis and tissue distributionR21AI145369 · NIAID · ROCKEFELLER UNIVERSITY · PI BRETON, GAELLE · 2020 to 2021
$399k
NCRR NIH HHS UL1 RR024143NIAID NIH HHS R21 AI145369NIAID NIH HHS R37 AI037526NIGMS NIH HHS R01 GM070683
6 · The paper itself

Abstract

To explore the influence of genetics on homeostatic regulation of dendritic cell (DC) numbers, we present a screen of DCs and their progenitors in lymphoid and non-lymphoid tissues in Collaborative Cross (CC) and Diversity Outbred (DO) mice. We report 30 and 71 loci with logarithm of the odds (LOD) scores >8.18 and ranging from 6.67 to 8.19, respectively. The analysis reveals the highly polygenic and pleiotropic architecture of this complex trait, including many of the previously identified genetic regulators of DC development and maturation. Two SNPs in genes potentially underlying variation in DC homeostasis, a splice variant in Gramd4 (rs235532740) and a missense variant in Orai3 (rs216659754), are confirmed by gene editing using CRISPR-Cas9. Gramd4 is a central regulator of DC homeostasis that impacts the entire DC lineage, and Orai3 regulates cDC2 numbers in tissues. Overall, the data reveal a large number of candidate genes regulating DC homeostasis in vivo.

Indexed as

Dendritic CellsQuantitative Trait LociAnimalsCell CountChromosome MappingHomeostasisMiceMice, Inbred C57BLPolymorphism, Single NucleotideCollaborative CrossCP: ImmunologyDCpoiesisdendritic cell homeostasisdendritic cell lineagedendritic cell progenitorsdendritic cell subsetsDiversity OutbredimmunogeneticsQTL mappingtissue distribution

Identifiers

PMID38823019
PMCPMC11726347

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.