Evidence map›Paper›PMID 38823018›Full record

ArticleCell reports2024

Endonucleolytic RNA cleavage drives changes in gene expression during the innate immune response.

Agnes Karasik, Hernan A Lorenzi, Andrew V DePass, Nicholas R Guydosh

Abstract read
In one paragraph

Article in Cell reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. RNase L Regulates Antiviral Responsiveness through Cleavage of XBP1 mRNA.bioRxiv : the preprint server for biology · 2026
    Article
  7. Nonsense-mediated decay controls a negative feedback loop in innate immune sensing.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. The Unusual Role of Ribonuclease L in Innate Immunity.Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Agnes KarasikLaboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Hernan A LorenziTriLab Bioinformatics Group, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Andrew V DePassLaboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Nicholas R GuydoshLaboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address: nicholas.guydosh@nih.gov.

Funding

Molecular mechanism of the ribosome and functions of translational regulationZIADK075132 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GUYDOSH, NICHOLAS · 2016 to 2025
$14.3M
The role of host mRNA cleavage by RNase L in viral infectionsR00GM143484 · NIGMS · OHIO STATE UNIVERSITY · PI Agnes Karasik · 2025 to 2026
$498k
Ribosomal translation in the 3'UTRs of mRNAs in viral infectionsFI2GM128743 · NIGMS · U.S. NATIONAL INST DIABETES/DIGST/KIDNEY · PI KARASIK, AGNES · 2018 to 2018
–
Intramural NIH HHS ZIA DK075132NIGMS NIH HHS FI2 GM128743NIGMS NIH HHS R00 GM143484
6 · The paper itself

Abstract

Viral infection triggers several double-stranded RNA (dsRNA) sensors that lead to changes in gene expression in the cell. One of these sensors activates an endonuclease, ribonuclease L (RNase L), that cleaves single-stranded RNA. However, how the resultant widespread RNA fragmentation affects gene expression is not fully understood. Here, we show that this fragmentation induces the ribotoxic stress response via ZAKα, potentially through stalled ribosomes and/or ribosome collisions. The p38 and JNK pathways that are activated as part of this response promote outcomes that inhibit the virus, such as programmed cell death. We also show that RNase L limits the translation of stress-responsive genes. Intriguingly, we found that the activity of the generic endonuclease, RNase A, recapitulates many of the same molecular phenotypes as activated RNase L, demonstrating how widespread RNA cleavage can evoke an antiviral program.

Indexed as

EndoribonucleasesImmunity, InnateAnimalsHumansMiceRibonuclease, PancreaticRNA CleavageRNA, Double-Stranded2-5A-dependent ribonucleaseEndoribonucleasesRibonuclease, PancreaticRNA, Double-StrandedCP: ImmunologyCP: Molecular biologyendonucleaseintegrated stress responseribosome collisionsRNase ARNase LZAKα

Identifiers

PMID38823018
PMCPMC11251458

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.