Evidence map›Paper›PMID 38822238›Full record

ArticleBMC genomics2024

Identification of key genes controlling monoterpene biosynthesis of Citral-type Cinnamomum bodinieri Levl. Based on transcriptome and metabolite profiling.

Qingyan Ling, Beihong Zhang, Yanbo Wang, Zufei Xiao, Jiexi Hou, Qingqing Liu, Jie Zhang, Changlong Xiao, Zhinong Jin, Yuanqiu Liu

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Qingyan LingSchool of Soil and Water Conservation, Nanchang Institute of Technology, Jiangxi Provincial Engineering Research Center For Seed-Breeding and Utilization of Camphor Trees, Nanchang, China.
Beihong ZhangSchool of Soil and Water Conservation, Nanchang Institute of Technology, Jiangxi Provincial Engineering Research Center For Seed-Breeding and Utilization of Camphor Trees, Nanchang, China.
Yanbo WangSchool of Soil and Water Conservation, Nanchang Institute of Technology, Jiangxi Provincial Engineering Research Center For Seed-Breeding and Utilization of Camphor Trees, Nanchang, China.
Zufei XiaoSchool of Soil and Water Conservation, Nanchang Institute of Technology, Jiangxi Provincial Engineering Research Center For Seed-Breeding and Utilization of Camphor Trees, Nanchang, China.
Jiexi HouSchool of Soil and Water Conservation, Nanchang Institute of Technology, Jiangxi Provincial Engineering Research Center For Seed-Breeding and Utilization of Camphor Trees, Nanchang, China.
Qingqing LiuSchool of Soil and Water Conservation, Nanchang Institute of Technology, Jiangxi Provincial Engineering Research Center For Seed-Breeding and Utilization of Camphor Trees, Nanchang, China.
Jie ZhangSchool of Soil and Water Conservation, Nanchang Institute of Technology, Jiangxi Provincial Engineering Research Center For Seed-Breeding and Utilization of Camphor Trees, Nanchang, China.
Changlong XiaoSchool of Soil and Water Conservation, Nanchang Institute of Technology, Jiangxi Provincial Engineering Research Center For Seed-Breeding and Utilization of Camphor Trees, Nanchang, China.
Zhinong JinSchool of Soil and Water Conservation, Nanchang Institute of Technology, Jiangxi Provincial Engineering Research Center For Seed-Breeding and Utilization of Camphor Trees, Nanchang, China. hbszlqy@163.com.
Yuanqiu LiuCollege of Forestry, Jiangxi Agricultural University, Jiangxi Key Laboratory of Subtropical Forest Resources Cultivation, Nanchang, China. liuyq404@163.com.

Funding

Jiangxi Education Department GJJ2201515Jiangxi provincial department of forestry [2020]07Jiangxi Science and Technology Department 20203ABC28W016Jiangxi Science and Technology Department 20232BAB205055
6 · The paper itself

Abstract

The citral-type is the most common chemotype in Cinnamomum bodinieri Levl (C. bodinieri), which has been widely used in the daily necessities, cosmetics, biomedicine, and aromatic areas due to their high citral content. Despite of this economic prospect, the possible gene-regulatory roles of citral biosynthesis in the same geographic environment remains unknown. In this study, the essential oils (EOs) of three citral type (B1, B2, B3) and one non-citral type (B0) varieties of C. bodinieri were identified by GC-MS after hydrodistillation extraction in July. 43 components more than 0.10% were identified in the EOs, mainly composed of monoterpenes (75.8-91.84%), and high content citral (80.63-86.33%) were identified in citral-type. Combined transcriptome and metabolite profiling analysis, plant-pathogen interaction(ko04626), MAPK signaling pathway-plant(ko04016), starch and sucrose metabolism(ko00500), plant hormone signal transduction(ko04075), terpenoid backbone biosynthesis (ko00900) and monoterpenoid biosynthesis (ko00902) pathways were enriched significantly. The gene expression of differential genes were linked to the monoterpene content, and the geraniol synthase (CbGES), alcohol dehydrogenase (CbADH), geraniol 8-hydroxylase-like (CbCYP76B6-like) and 8-hydroxygeraniol dehydrogenase (Cb10HGO) were upregulated in the citral-type, indicating that they were associated with high content of geraniol and citral. The activities of CbGES and CbADH in citral type were higher than in non-citral type, which was corroborated by enzyme-linked immunosorbent assay (ELISA). This study on the accumulation mechanism of citral provides a theoretical basis for the development of essential oil of C. bodinieri.

Indexed as

Acyclic MonoterpenesCinnamomumGene Expression ProfilingMonoterpenesGene Expression Regulation, PlantGenes, PlantOils, VolatileTranscriptomeAcyclic MonoterpenescitralMonoterpenesOils, VolatileCinnamomum bodinieri Levl.CitralGeraniolMetaboliteRNA-Seq

Identifiers

PMID38822238
PMCPMC11141066

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.