Evidence map›Paper›PMID 38822137›Full record

ArticleThe EMBO journal2024

YIPF3 and YIPF4 regulate autophagic turnover of the Golgi apparatus.

Shinri Kitta, Tatsuya Kaminishi, Momoko Higashi, Takayuki Shima, Kohei Nishino, Nobuhiro Nakamura, Hidetaka Kosako, Tamotsu Yoshimori, Akiko Kuma

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Article
  3. Selective autophagy in kidney health and disease.Nature reviews. Nephrology · 2026
    Review
  4. Article
  5. Review
  6. Core principles of autophagy initiation mechanisms.Nature structural & molecular biology · 2026
    Review
  7. Article
  8. Article
  9. A role for CASM in the repair of damaged Golgi architecture.bioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Shinri KittaDepartment of Genetics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.ORCID http://orcid.org/0009-0003-1071-1463
Tatsuya KaminishiDepartment of Genetics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.ORCID http://orcid.org/0000-0001-5056-1074
Momoko HigashiLaboratory of Intracellular Membrane Dynamics, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, 565-0871, Japan.
Takayuki ShimaDepartment of Genetics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Kohei NishinoDivision of Cell Signaling, Fujii Memorial Institute of Medical Sciences, Institute of Advanced Medical Sciences, Tokushima University, Tokushima, 770-8503, Japan.
Nobuhiro NakamuraFaculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita, Kyoto, 603-8555, Japan.
Hidetaka KosakoDivision of Cell Signaling, Fujii Memorial Institute of Medical Sciences, Institute of Advanced Medical Sciences, Tokushima University, Tokushima, 770-8503, Japan.ORCID http://orcid.org/0000-0003-3228-6368
Tamotsu YoshimoriDepartment of Genetics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan. tamyoshi@fbs.osaka-u.ac.jp.ORCID http://orcid.org/0000-0002-7041-890X
Akiko KumaDepartment of Genetics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan. kuma@fbs.osaka-u.ac.jp.ORCID http://orcid.org/0009-0009-0451-6307

Funding

Japan Agency for Medical Research and Development (AMED) 22gm1410014h0001MEXT | Japan Science and Technology Agency (JST) JPMJCR17H6MEXT | Japan Society for the Promotion of Science (JSPS) 19K06637MEXT | Japan Society for the Promotion of Science (JSPS) 22H04982MEXT | Japan Society for the Promotion of Science (JSPS) 23K05764MEXT | Japan Society for the Promotion of Science (JSPS) 25111005
6 · The paper itself

Abstract

The degradation of organelles by autophagy is essential for cellular homeostasis. The Golgi apparatus has recently been demonstrated to be degraded by autophagy, but little is known about how the Golgi is recognized by the forming autophagosome. Using quantitative proteomic analysis and two novel Golgiphagy reporter systems, we found that the five-pass transmembrane Golgi-resident proteins YIPF3 and YIPF4 constitute a Golgiphagy receptor. The interaction of this complex with LC3B, GABARAP, and GABARAPL1 is dependent on a LIR motif within YIPF3 and putative phosphorylation sites immediately upstream; the stability of the complex is governed by YIPF4. Expression of a YIPF3 protein containing a mutated LIR motif caused an elongated Golgi morphology, indicating the importance of Golgi turnover via selective autophagy. The reporter assays reported here may be readily adapted to different experimental contexts to help deepen our understanding of Golgiphagy.

Indexed as

Adaptor Proteins, Signal TransducingAutophagyGolgi ApparatusMicrotubule-Associated ProteinsApoptosis Regulatory ProteinsHeLa CellsHumansMembrane ProteinsMembrane Transport ProteinsProteomicsAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsGABARAPL1 protein, humanGABARAP protein, humanMAP1LC3B protein, humanMembrane ProteinsMembrane Transport ProteinsMicrotubule-Associated ProteinsAutophagy ReceptorGolgiphagyGolgi TurnoverOrganelle DegradationSelective Autophagy

Identifiers

PMID38822137
PMCPMC11250848

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.