Evidence map›Paper›PMID 38822028›Full record

ArticleNature metabolism2024

PNPO-PLP axis senses prolonged hypoxia in macrophages by regulating lysosomal activity.

Hiroki Sekine, Haruna Takeda, Norihiko Takeda, Akihiro Kishino, Hayato Anzawa, Takayuki Isagawa, Nao Ohta, Shohei Murakami, Hideya Iwaki, Nobufumi Kato and 16 more

Erratum issuedAbstract read
In one paragraph

Article in Nature metabolism, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors.

Hiroki SekineDepartment of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan. hiroki.sekine.c2@tohoku.ac.jp.ORCID http://orcid.org/0000-0002-0929-6456
Haruna Takeda *Department of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan.ORCID http://orcid.org/0000-0003-1213-9619
Norihiko Takeda *Division of Cardiology and Metabolism, Center for Molecular Medicine, Jichi Medical University, Shimotsuke, Japan.
Akihiro Kishino *Department of Gene Expression Regulation, IDAC, Tohoku University, Sendai, Japan.
Hayato Anzawa *Department of System Bioinformatics, Graduate School of Information Sciences, Tohoku University, Sendai, Japan.ORCID http://orcid.org/0000-0002-9446-1291
Takayuki IsagawaDivision of Cardiology and Metabolism, Center for Molecular Medicine, Jichi Medical University, Shimotsuke, Japan.
Nao OhtaDepartment of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan.
Shohei MurakamiDepartment of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan.ORCID http://orcid.org/0000-0002-2555-1568
Hideya IwakiDepartment of Gene Expression Regulation, IDAC, Tohoku University, Sendai, Japan.
Nobufumi KatoDepartment of Gene Expression Regulation, IDAC, Tohoku University, Sendai, Japan.
Shu KimuraDepartment of Gene Expression Regulation, IDAC, Tohoku University, Sendai, Japan.
Zun LiuDepartment of Gene Expression Regulation, IDAC, Tohoku University, Sendai, Japan.
Koichiro KatoDivision of Oxygen Biology, United Centers for Advanced Research and Translational Medicine, Tohoku University Graduate School of Medicine, Sendai, Japan.
Fumiki KatsuokaDepartment of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.ORCID http://orcid.org/0000-0003-0939-7887
Masayuki YamamotoDepartment of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.ORCID http://orcid.org/0000-0002-9073-9436
Fumihito MiuraDepartment of Biochemistry, Kyushu University Graduate School of Medical Sciences, Fukuoka, Japan.ORCID http://orcid.org/0000-0003-2656-486X
Takashi ItoDepartment of Biochemistry, Kyushu University Graduate School of Medical Sciences, Fukuoka, Japan.
Masatomo TakahashiDivision of Metabolomics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.ORCID http://orcid.org/0000-0002-2493-2684
Yoshihiro IzumiDivision of Metabolomics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.ORCID http://orcid.org/0000-0003-4608-4652
Hiroyuki FujitaAdvanced Research Laboratory, Canon Medical Systems Corporation, Otawara, Japan.
Hitoshi YamagataAdvanced Research Laboratory, Canon Medical Systems Corporation, Otawara, Japan.
Takeshi BambaDivision of Metabolomics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.ORCID http://orcid.org/0000-0002-7442-2738
Takaaki AkaikeDepartment of Environmental Medicine and Molecular Toxicology, Tohoku University Graduate School of Medicine, Sendai, Japan.ORCID http://orcid.org/0000-0002-0623-1710
Norio SuzukiDivision of Oxygen Biology, United Centers for Advanced Research and Translational Medicine, Tohoku University Graduate School of Medicine, Sendai, Japan.ORCID http://orcid.org/0000-0001-6100-3350
Kengo KinoshitaDepartment of System Bioinformatics, Graduate School of Information Sciences, Tohoku University, Sendai, Japan.ORCID http://orcid.org/0000-0003-3453-2171
Hozumi MotohashiDepartment of Medical Biochemistry, Tohoku University Graduate School of Medicine, Sendai, Japan. hozumi.motohashi.a7@tohoku.ac.jp.ORCID http://orcid.org/0000-0002-7261-1033

Funding

Japan Agency for Medical Research and Development (AMED) JP21am0101103Japan Agency for Medical Research and Development (AMED) JP21gm5010002MEXT | Japan Society for the Promotion of Science (JSPS) 17H06299MEXT | Japan Society for the Promotion of Science (JSPS) 17H06304MEXT | Japan Society for the Promotion of Science (JSPS) 17K08618MEXT | Japan Society for the Promotion of Science (JSPS) 20K07320MEXT | Japan Society for the Promotion of Science (JSPS) 21H04799MEXT | Japan Society for the Promotion of Science (JSPS) 21H05258MEXT | Japan Society for the Promotion of Science (JSPS) 21H05264MEXT | Japan Society for the Promotion of Science (JSPS) 23H02672MEXT | Japan Society for the Promotion of Science (JSPS) 24H00605MEXT | Japan Society for the Promotion of Science (JSPS) JPJSBP120195402
6 · The paper itself

Abstract

Oxygen is critical for all metazoan organisms on the earth and impacts various biological processes in physiological and pathological conditions. While oxygen-sensing systems inducing acute hypoxic responses, including the hypoxia-inducible factor pathway, have been identified, those operating in prolonged hypoxia remain to be elucidated. Here we show that pyridoxine 5'-phosphate oxidase (PNPO), which catalyses bioactivation of vitamin B6, serves as an oxygen sensor and regulates lysosomal activity in macrophages. Decreased PNPO activity under prolonged hypoxia reduced an active form of vitamin B6, pyridoxal 5'-phosphate (PLP), and inhibited lysosomal acidification, which in macrophages led to iron dysregulation, TET2 protein loss and delayed resolution of the inflammatory response. Among PLP-dependent metabolism, supersulfide synthesis was suppressed in prolonged hypoxia, resulting in the lysosomal inhibition and consequent proinflammatory phenotypes of macrophages. The PNPO-PLP axis creates a distinct layer of oxygen sensing that gradually shuts down PLP-dependent metabolism in response to prolonged oxygen deprivation.

Indexed as

LysosomesMacrophagesPyridoxal PhosphateAnimalsCell HypoxiaHypoxiaInflammationMiceOxygenVitamin B 6OxygenPyridoxal PhosphateVitamin B 6

Identifiers

PMID38822028
PMCPMC11599045

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.