Evidence map›Paper›PMID 38821923›Full record

ArticleNature communications2024

A theory of evolutionary dynamics on any complex population structure reveals stem cell niche architecture as a spatial suppressor of selection.

Yang Ping Kuo, César Nombela-Arrieta, Oana Carja

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Mixed updating in structured populations.PLoS computational biology · 2026
    Article
  2. Article
  3. Local negative frequency dependence can decrease global coexistence in fragmented populations.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Categorizing update mechanisms for graph-structured metapopulations.Journal of the Royal Society, Interface · 2023
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yang Ping KuoComputational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA.
César Nombela-ArrietaDepartment of Medical Oncology and Hematology, University and University Hospital Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-0415-259X
Oana CarjaComputational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA. oana@cmu.edu.ORCID http://orcid.org/0000-0002-4296-2326

Funding

Integrated Interdisciplinary, inter-university PhD Program Computational Biology (T32)T32EB009403 · NIBIB · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BAHAR, IVET, BAR-JOSEPH, ZIV · 2009 to 2023
$4.4M
From pattern to function: eco-evolutionary representations of complex spatial structure for the new era of spatial biologyR35GM147445 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI Oana Carja · 2022 to 2026
$1.9M
NIBIB NIH HHS T32 EB009403NIGMS NIH HHS R35 GM147445U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35GM147445
6 · The paper itself

Abstract

How the spatial arrangement of a population shapes its evolutionary dynamics has been of long-standing interest in population genetics. Most previous studies assume a small number of demes or symmetrical structures that, most often, act as well-mixed populations. Other studies use network theory to study more heterogeneous spatial structures, however they usually assume small, regular networks, or strong constraints on the strength of selection considered. Here we build network generation algorithms, conduct evolutionary simulations and derive general analytic approximations for probabilities of fixation in populations with complex spatial structure. We build a unifying evolutionary theory across network families and derive the relevant selective parameter, which is a combination of network statistics, predictive of evolutionary dynamics. We also illustrate how to link this theory with novel datasets of spatial organization and use recent imaging data to build the cellular spatial networks of the stem cell niches of the bone marrow. Across a wide variety of parameters, we find these networks to be strong suppressors of selection, delaying mutation accumulation in this tissue. We also find that decreases in stem cell population size also decrease the suppression strength of the tissue spatial structure.

Indexed as

AlgorithmsBiological EvolutionStem Cell NicheAnimalsBone MarrowComputer SimulationGenetics, PopulationHumansMutationSelection, Genetic

Identifiers

PMID38821923
PMCPMC11143212

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.