Evidence map›Paper›PMID 38820476›Full record

ArticleJCO precision oncology2024

Integrated Epigenetic and Transcriptomic Analysis Identifies

Qierra R Brockman, Jeffrey D Rytlewski, Mohammed Milhem, Varun Monga, Rebecca D Dodd

Abstract read
In one paragraph

Article in JCO precision oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Qierra R BrockmanDepartment of Internal Medicine, University of Iowa, Iowa City, IA.ORCID 0000-0001-8562-4565
Jeffrey D RytlewskiDepartment of Internal Medicine, University of Iowa, Iowa City, IA.ORCID 0000-0003-0010-7548
Mohammed MilhemDepartment of Internal Medicine, University of Iowa, Iowa City, IA.
Varun MongaDivision of Hematology/Oncology, University of California, San Francisco, CA.ORCID 0000-0002-1185-5448
Rebecca D DoddDepartment of Internal Medicine, University of Iowa, Iowa City, IA.ORCID 0000-0001-7295-1882

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Jon C.D. Houtman · 2000 to 2026
$70.0M
HARVARD-LONGWOOD RESEARCH TRAINING IN VASCULAR SURGERYT32HL007734 · NHLBI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI FERRAN, CHRISTIANE, LOGERFO, FRANK W · 1993 to 2023
$10.5M
PROGRAM IN HEMOSTASIS AND THROMBOSIS FOR ACADEMICT32HL007344 · NHLBI · UNIVERSITY OF IOWA · PI Anil Kumar Chauhan, Steven R Lentz · 1985 to 2026
$6.5M
Predoctoral Training in the Pharmacological SciencesT32GM067795 · NIGMS · UNIVERSITY OF IOWA · PI STRACK, STEFAN · 2004 to 2021
$3.4M
Ink4a/ARF/Ink4b locus in Neurofibromatosis Type 1R01NS119322 · NINDS · UNIVERSITY OF IOWA · PI Benjamin Will Darbro, Rebecca D Dodd · 2022 to 2026
$2.6M
NCI NIH HHS P30 CA086862NHLBI NIH HHS T32 HL007344NHLBI NIH HHS T32 HL007734NIGMS NIH HHS T32 GM067795NINDS NIH HHS R01 NS119322
6 · The paper itself

Abstract

purposeSarcomas are a complex group of highly aggressive and metastatic tumors with over 100 distinct subtypes. Because of their diversity and rarity, it is challenging to generate multisarcoma signatures that are predictive of patient outcomes. MATERIALS AND

methodsHere, we identify a DNA methylation signature for progression and metastasis of numerous sarcoma subtypes using multiple epigenetic and genomic patient data sets. Malignant Peripheral Nerve Sheath Tumors (MPNSTs) are highly metastatic sarcomas with frequent loss of the histone methyltransferase, PRC2. Loss of PRC2 is associated with MPNST metastasis and plays a critical noncanonical role in DNA methylation.

resultsWe found that over 900

conclusionThese results might have broad implications for the clinical management and surveillance of sarcoma.

Indexed as

Disease ProgressionDNA MethylationInterleukin-17Epigenesis, GeneticGene Expression ProfilingHumansNeoplasm MetastasisNerve Sheath NeoplasmsNeurofibrosarcomaTranscriptomeInterleukin-17

Identifiers

PMID38820476
PMCPMC11552688

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.