Evidence map›Paper›PMID 38820156›Full record

ArticleScience advances2024

Influence of point mutations on PR65 conformational adaptability: Insights from molecular simulations and nanoaperture optical tweezers.

Anupam Banerjee, Samuel Mathew, Mohsin M Naqvi, Sema Z Yilmaz, Maria Zacharopoulou, Pemra Doruker, Janet R Kumita, Shang-Hua Yang, Mert Gur, Laura S Itzhaki and 2 more

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Ice-phase optothermal tweezers.Nature communications · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Anupam BanerjeeLaufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794, USA.ORCID 0000-0002-2859-7705
Samuel MathewDepartment of Electrical and Computer Engineering, University of Victoria, Victoria V8P 5C2, Canada.
Mohsin M NaqviDepartment of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge CB2 1PD, UK.ORCID 0000-0002-4358-4195
Sema Z YilmazDepartment of Mechanical Engineering, Istanbul Technical University, 34437 Istanbul, Turkey.ORCID 0000-0002-4839-3777
Maria ZacharopoulouDepartment of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge CB2 1PD, UK.ORCID 0000-0002-3660-2797
Pemra DorukerDepartment of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA.ORCID 0000-0002-4824-2223
Janet R KumitaDepartment of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge CB2 1PD, UK.ORCID 0000-0002-3887-4964
Shang-Hua YangDepartment of Electrical Engineering, National Tsing Hua University, Hsinchu 30013, Taiwan.ORCID 0000-0002-5528-9281
Mert GurDepartment of Mechanical Engineering, Istanbul Technical University, 34437 Istanbul, Turkey.ORCID 0000-0003-0983-4397
Laura S ItzhakiDepartment of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge CB2 1PD, UK.ORCID 0000-0001-6504-2576
Reuven GordonDepartment of Electrical and Computer Engineering, University of Victoria, Victoria V8P 5C2, Canada.ORCID 0000-0002-1485-6067
Ivet BaharLaufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794, USA.ORCID 0000-0001-9959-4176

Funding

Toward a Deeper Understanding of Allostery and Allotargeting by Computational ApproachesR01GM139297 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Ivet Bahar · 2021 to 2026
$2.8M
NIGMS NIH HHS R01 GM139297
6 · The paper itself

Abstract

PR65 is the HEAT repeat scaffold subunit of the heterotrimeric protein phosphatase 2A (PP2A) and an archetypal tandem repeat protein. Its conformational mechanics plays a crucial role in PP2A function by opening/closing substrate binding/catalysis interface. Using in silico saturation mutagenesis, we identified PR65 "hinge" residues whose substitutions could alter its conformational adaptability and thereby PP2A function, and selected six mutations that were verified to be expressed and soluble. Molecular simulations and nanoaperture optical tweezers revealed consistent results on the specific effects of the mutations on the structure and dynamics of PR65. Two mutants observed in simulations to stabilize extended/open conformations exhibited higher corner frequencies and lower translational scattering in experiments, indicating a shift toward extended conformations, whereas another displayed the opposite features, confirmed by both simulations and experiments. The study highlights the power of single-molecule nanoaperture-based tweezers integrated with in silico approaches for exploring the effect of mutations on protein structure and dynamics.

Indexed as

Protein ConformationProtein Phosphatase 2HumansMolecular Dynamics SimulationOptical TweezersPoint MutationProtein Phosphatase 2

Identifiers

PMID38820156
PMCPMC11141623

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.