Evidence map›Paper›PMID 38819848›Full record

ArticleChembiochem : a European journal of chemical biology2024

Imidazoles are Tunable Nucleofuges for Developing Tyrosine-Reactive Electrophiles.

R Justin Grams, Kun Yuan, Michael W Founds, Madeleine L Ware, Michael G Pilar, Ku-Lung Hsu

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. A Covalent PFKL Activator Suppresses Tumor Growth.bioRxiv : the preprint server for biology · 2025
    Article
  7. Review
  8. Article
  9. Review
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

R Justin GramsDepartment of Chemistry, University of Texas at Austin, 100 E 24th St, Texas, 78712, United States.
Kun YuanDepartment of Chemistry, University of Virginia, Charlottesville, Virginia, 22904, United States.
Michael W FoundsDepartment of Chemistry, University of Texas at Austin, 100 E 24th St, Texas, 78712, United States.
Madeleine L WareDepartment of Chemistry, University of Texas at Austin, 100 E 24th St, Texas, 78712, United States.
Michael G PilarDepartment of Chemistry, University of Virginia, Charlottesville, Virginia, 22904, United States.
Ku-Lung HsuDepartment of Chemistry, University of Texas at Austin, 100 E 24th St, Texas, 78712, United States.ORCID https://orcid.org/0000-0001-5620-3972

Funding

Defining and targeting substrate specificity of protein tyrosine phosphatasesR01GM144472 · NIGMS · UNIVERSITY OF VIRGINIA · PI HSU, KU-LUNG · 2022 to 2025
$1.6M
Chemical proteomic investigation of lipid kinase specificity and druggabilityR01AI169412 · NIAID · UNIVERSITY OF VIRGINIA · PI Ku-Lung Hsu · 2023 to 2026
$1.5M
NIAID NIH HHS R01 AI169412NIGMS NIH HHS R01 GM144472NIH HHS AI169412NIH HHS GM144472The Welch Foundation F-2143-20230405
6 · The paper itself

Abstract

Imidazole-1-sulfonyl and -sulfonate (imidazylate) are widely used in synthetic chemistry as nucleofuges for diazotransfer, nucleophilic substitution, and cross-coupling reactions. The utility of these reagents for protein bioconjugation, in contrast, have not been comprehensively explored and important considering the prevalence of imidazoles in biomolecules and drugs. Here, we synthesized a series of alkyne-modified sulfonyl- and sulfonate-imidazole probes to investigate the utility of this electrophile for protein binding. Alkylation of the distal nitrogen activated the nucleofuge capability of the imidazole to produce sulfonyl-imidazolium electrophiles that were highly reactive but unstable for biological applications. In contrast, arylsulfonyl imidazoles functioned as a tempered electrophile for assessing ligandability of select tyrosine and lysine sites in cell proteomes and when mated to a recognition element could produce targeted covalent inhibitors with reduced off-target activity. In summary, imidazole nucleofuges show balanced stability and tunability to produce sulfone-based electrophiles that bind functional tyrosine and lysine sites in the proteome.

Indexed as

ImidazolesTyrosineAlkylationHumansMolecular StructureImidazolesTyrosineactivity-based protein profilingchemoproteomicscovalent ligandsdrug discoverySuFExSuTEx

Identifiers

PMID38819848
PMCPMC11462048

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.