Evidence map›Paper›PMID 38818736›Full record

ArticleThe ISME journal2024

Lytic and temperate phage naturally coexist in a dynamic population model.

Ofer Kimchi, Yigal Meir, Ned S Wingreen

Abstract read
In one paragraph

Article in The ISME journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Positive bacteria-phage interactions drive sulfamethoxazole removal.Environmental science and ecotechnology · 2026
    Article
  3. Article
  4. Prophage: agent provocateur?Archives of microbiology · 2026
    Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Bacterial defense and phage counterdefense lead to coexistence in a modeled ecosystem.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ofer KimchiLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Yigal MeirDepartment of Physics, Ben-Gurion University, Be'er Sheva 84105, Israel.
Ned S WingreenLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.

Funding

Center for the Physics of Biological Function PHY-1734030Chan Zuckerberg Initiative DAF DAF2024-342781Lewis-Sigler Institute for Integrative Genomics at Princeton UniversityNational Science Foundation PHY-1607611Silicon Valley Community Foundation
6 · The paper itself

Abstract

When phage infect their bacterial hosts, they may either lyse the cell and generate a burst of new phage, or lysogenize the bacterium, incorporating the phage genome into it. Phage lysis/lysogeny strategies are assumed to be highly optimized, with the optimal tradeoff depending on environmental conditions. However, in nature, phage of radically different lysis/lysogeny strategies coexist in the same environment, preying on the same bacteria. How can phage preying on the same bacteria coexist if one is more optimal than the other? Here, we address this conundrum within a modeling framework, simulating the population dynamics of communities of phage and their lysogens. We find that coexistence between phage of different lysis/lysogeny strategies is a natural outcome of chaotic population dynamics that arise within sufficiently diverse communities, which ensure no phage is able to absolutely dominate its competitors. Our results further suggest a bet-hedging mechanism at the level of the phage pan-genome, wherein obligate lytic (virulent) strains typically outcompete temperate strains, but also more readily fluctuate to extinction within a local community.

Indexed as

BacteriaBacteriophagesLysogenyGenome, ViralModels, BiologicalPopulation Dynamicscoexistenceecologylysogenlyticmodelphagetemperatevirulent

Identifiers

PMID38818736
PMCPMC11187991

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.