Evidence map›Paper›PMID 38818485›Full record

ArticlemLife2022

DANMEL: A manually curated reference database for analyzing mobile genetic elements associated with bacterial drug resistance.

Peng Wang, Xiaoyuan Jiang, Kai Mu, Ying Jing, Zhe Yin, Yujun Cui, Cuidan Li, Xinhua Luo, Fangzhou Chen, Ting Yu and 4 more

Abstract read
In one paragraph

Article in mLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Co-occurrence of blaBMC microbiology · 2026
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  6. Emergence of blaBMC microbiology · 2026
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  8. Distribution of ST116 carbapenem-resistantFrontiers in cellular and infection microbiology · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Genomic adaptation ofiMetaOmics · 2024
    Article
  14. Article
  15. Article
  16. Genetic Characteristics of Novel IncInfection and drug resistance · 2024
    Article
  17. Emergence ofFrontiers in microbiology · 2024
    Article
  18. Article
  19. Genomic epidemiology and heterogeneity ofEmerging microbes & infections · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Peng WangState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.
Xiaoyuan JiangState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.
Kai MuState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.
Ying JingState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.
Zhe YinState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.
Yujun CuiState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.
Cuidan LiBeijing Institute of Genomics, Chinese Academy of Sciences China National Center for Bioinformation Beijing China.
Xinhua LuoState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.
Fangzhou ChenState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.
Ting YuState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.
Zhichen ZhuState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.
Yansong SunState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.
Fei ChenBeijing Institute of Genomics, Chinese Academy of Sciences China National Center for Bioinformation Beijing China.ORCID 0000-0003-3895-6318
Dongsheng ZhouState Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing China.ORCID 0000-0003-3827-5969

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have developed a manually curated online reference database, DANMEL (http://124.239.252.254/danmel/), that addresses the lack of accurate dissection and annotation of the genetic structures of mobile genetic elements (MGEs) with genes for drug resistance. DANMEL contains accurately annotated and genetically dissected reference MGEs covering 5 categories and 135 subcategories/subfamilies of MGEs. Further, DANMEL provides a detailed guide on how to precisely annotate MGEs. DANMEL also provides SEARCH/BLAST functions to facilitate finding reference MGEs. Overall, DANMEL will aid researchers to conduct in-depth genetic analysis of sequenced bacterial MGEs with drug-resistance genes and further facilitate a better understanding of bacterial MGEs associated with drug resistance at a genomic level.

Identifiers

PMID38818485
PMCPMC10989931

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.