Evidence map›Paper›PMID 38818014›Full record

ReviewPathology oncology research : POR2024

Can long-read sequencing tackle the barriers, which the next-generation could not? A review.

Nikolett Szakállas, Barbara K Barták, Gábor Valcz, Zsófia B Nagy, István Takács, Béla Molnár

Abstract readReview
In one paragraph

Review in Pathology oncology research : POR, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Long-read sequencing for neurological disorders: opportunities, challenges, and future directions.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Assessing a single-cell multi-omic analytic platform to characterizeFrontiers in bioengineering and biotechnology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nikolett SzakállasDepartment of Biological Physics, Faculty of Science, Eötvös Loránd University, Budapest, Hungary.
Barbara K BartákDepartment of Internal Medicine and Oncology, Faculty of Medicine, Semmelweis University, Budapest, Hungary.
Gábor ValczDepartment of Internal Medicine and Oncology, Faculty of Medicine, Semmelweis University, Budapest, Hungary.
Zsófia B NagyDepartment of Internal Medicine and Oncology, Faculty of Medicine, Semmelweis University, Budapest, Hungary.
István TakácsDepartment of Internal Medicine and Oncology, Faculty of Medicine, Semmelweis University, Budapest, Hungary.
Béla MolnárDepartment of Internal Medicine and Oncology, Faculty of Medicine, Semmelweis University, Budapest, Hungary.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The large-scale heterogeneity of genetic diseases necessitated the deeper examination of nucleotide sequence alterations enhancing the discovery of new targeted drug attack points. The appearance of new sequencing techniques was essential to get more interpretable genomic data. In contrast to the previous short-reads, longer lengths can provide a better insight into the potential health threatening genetic abnormalities. Long-reads offer more accurate variant identification and genome assembly methods, indicating advances in nucleotide deflect-related studies. In this review, we introduce the historical background of sequencing technologies and show their benefits and limits, as well. Furthermore, we highlight the differences between short- and long-read approaches, including their unique advances and difficulties in methodologies and evaluation. Additionally, we provide a detailed description of the corresponding bioinformatics and the current applications.

Indexed as

High-Throughput Nucleotide SequencingComputational BiologyGenomicsHumansSequence Analysis, DNAbioinformaticsDNAlong-readsequencingshort-read

Identifiers

PMID38818014
PMCPMC11137202

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.