Evidence map›Paper›PMID 38816417›Full record

ArticleNature communications2024

An NLR paralog Pit2 generated from tandem duplication of Pit1 fine-tunes Pit1 localization and function.

Yuying Li, Qiong Wang, Huimin Jia, Kazuya Ishikawa, Ken-Ichi Kosami, Takahiro Ueba, Atsumi Tsujimoto, Miki Yamanaka, Yasuyuki Yabumoto, Daisuke Miki and 16 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Precision Editing of NLRS Improves Effector Recognition for Enhanced Disease Resistance.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  5. Duplication of a conserved mitochondrial enzyme gene arms parasitoid wasps with venom cytotoxicity and oogenesis regulation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Yuying Li *Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
Qiong Wang *Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 201602, China.ORCID http://orcid.org/0000-0002-5747-9900
Huimin Jia *College of Agronomy, Jiangxi Agricultural University, Nanchang, 330045, Jiangxi, China.ORCID http://orcid.org/0000-0002-3177-9761
Kazuya IshikawaShanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 201602, China.
Ken-Ichi KosamiShanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 201602, China.
Takahiro UebaLaboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, Nara, 630-0101, Japan.
Atsumi TsujimotoLaboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, Nara, 630-0101, Japan.
Miki YamanakaLaboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, Nara, 630-0101, Japan.
Yasuyuki YabumotoLaboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, Nara, 630-0101, Japan.
Daisuke MikiShanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 201602, China.ORCID http://orcid.org/0000-0001-6066-3357
Eriko SasakiFaculty of Science, Kyushu University, Fukuoka, 819-0395, Japan.ORCID http://orcid.org/0000-0002-0878-364X
Yoichiro FukaoDepartment of Bioinformatics, Ritsumeikan University, Shiga, 525-8577, Japan.
Masayuki FujiwaraYANMAR HOLDINGS Co., Ltd., Osaka, 530-8311, Japan.
Takako Kaneko-KawanoCollege of Pharmaceutical Sciences, Ritsumeikan University, Shiga, 525-8577, Japan.ORCID http://orcid.org/0009-0001-0718-6296
Li TanShanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 201602, China.
Chojiro KojimaGraduate School of Engineering Science, Yokohama National University, Yokohama, Kanagawa, 240-8501, Japan.ORCID http://orcid.org/0000-0003-2723-8249
Rod A WingArizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ, USA.
Alfino SebastianInstitute of Plant Science and Resources, Okayama University, Okayama, 710-0046, Japan.
Hideki NishimuraInstitute of Plant Science and Resources, Okayama University, Okayama, 710-0046, Japan.
Fumi FukadaInstitute of Plant Science and Resources, Okayama University, Okayama, 710-0046, Japan.ORCID http://orcid.org/0000-0002-6815-9929
Qingfeng NiuAdvanced Academy, Anhui Agricultural University, Research Centre for Biological Breeding Technology, Hefei, Anhui, 230036, China.ORCID http://orcid.org/0000-0001-6498-5265
Motoki ShimizuIwate Biotechnology Research Center, Iwate, 024-0003, Japan.
Kentaro YoshidaGraduate School of Agriculture, Kyoto University, Kyoto, 617-0001, Japan.
Ryohei TerauchiIwate Biotechnology Research Center, Iwate, 024-0003, Japan.
Ko ShimamotoLaboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, Nara, 630-0101, Japan.
Yoji KawanoShanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 201602, China. yoji.kawano@okayama-u.ac.jp.ORCID http://orcid.org/0000-0003-0687-2777

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 20H02988, 21H05035, 23H02213, 23K18030, JPJSBP20237408National Natural Science Foundation of China (National Science Foundation of China) 31572073 and 31772246National Natural Science Foundation of China (National Science Foundation of China) 31901985
6 · The paper itself

Abstract

NLR family proteins act as intracellular receptors. Gene duplication amplifies the number of NLR genes, and subsequent mutations occasionally provide modifications to the second gene that benefits immunity. However, evolutionary processes after gene duplication and functional relationships between duplicated NLRs remain largely unclear. Here, we report that the rice NLR protein Pit1 is associated with its paralogue Pit2. The two are required for the resistance to rice blast fungus but have different functions: Pit1 induces cell death, while Pit2 competitively suppresses Pit1-mediated cell death. During evolution, the suppression of Pit1 by Pit2 was probably generated through positive selection on two fate-determining residues in the NB-ARC domain of Pit2, which account for functional differences between Pit1 and Pit2. Consequently, Pit2 lost its plasma membrane localization but acquired a new function to interfere with Pit1 in the cytosol. These findings illuminate the evolutionary trajectory of tandemly duplicated NLR genes after gene duplication.

Indexed as

Gene DuplicationNLR ProteinsOryzaPlant ProteinsCell DeathDisease ResistanceEvolution, MolecularGene Expression Regulation, PlantPhylogenyPlant DiseasesNLR ProteinsPlant Proteins

Identifiers

PMID38816417
PMCPMC11139913

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.