Evidence map›Paper›PMID 38816206›Full record

ArticleFEMS microbiology ecology2024

Genomic analysis of Salmonella bacteriophages revealed multiple endolysin ORFs and importance of ligand-binding site of receptor-binding protein.

Mustafa Guzel, Aysenur Yucefaydali, Segah Yetiskin, Aysu Deniz, Osman Yaşar Tel, Mustafa Akçelik, Yeşim Soyer

Abstract read
In one paragraph

Article in FEMS microbiology ecology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Effect of egg cultivation methods onFood science and biotechnology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mustafa GuzelDepartment of Biotechnology, Middle East Technical University, Ankara 06800, Türkiye.ORCID 0000-0002-4750-7488
Aysenur YucefaydaliDepartment of Food Engineering, Faculty of Engineering, Middle East Technical University, Ankara 06800, Türkiye.
Segah YetiskinDepartment of Food Engineering, Faculty of Engineering, Middle East Technical University, Ankara 06800, Türkiye.
Aysu DenizDepartment of Food Engineering, Faculty of Engineering, Middle East Technical University, Ankara 06800, Türkiye.
Osman Yaşar TelFaculty of Veterinary Medicine, Harran University, Şanlıurfa 63300, Türkiye.
Mustafa AkçelikDepartment of Biology, Ankara University, Ankara 06100, Türkiye.ORCID 0000-0002-1227-2324
Yeşim SoyerDepartment of Biotechnology, Middle East Technical University, Ankara 06800, Türkiye.ORCID 0000-0001-9687-9715

Funding

Scientific and Technological Research Council of Turkey 119O345
6 · The paper itself

Abstract

Salmonella is a prevalent foodborne pathogen causing millions of global cases annually. Antimicrobial resistance is a growing public health concern, leading to search for alternatives like bacteriophages. A total of 97 bacteriophages, isolated from cattle farms (n = 48), poultry farms (n = 37), and wastewater (n = 5) samples in Türkiye, were subjected to host-range analysis using 36 Salmonella isolates with 18 different serotypes. The broadest host range belonged to an Infantis phage (MET P1-091), lysing 28 hosts. A total of 10 phages with the widest host range underwent further analysis, revealing seven unique genomes (32-243 kb), including a jumbophage (>200 kb). Except for one with lysogenic properties, none of them harbored virulence or antibiotic resistance genes, making them potential Salmonella reducers in different environments. Examining open reading frames (ORFs) of endolysin enzymes revealed surprising findings: five of seven unique genomes contained multiple endolysin ORFs. Despite sharing same endolysin sequences, phages exhibited significant differences in host range. Detailed analysis unveiled diverse receptor-binding protein sequences, with similar structures but distinct ligand-binding sites. These findings emphasize the importance of ligand-binding sites of receptor-binding proteins. Additionally, bacterial reduction curve and virulence index revealed that Enteritidis phages inhibit bacterial growth even at low concentrations, unlike Infantis and Kentucky phages.

Indexed as

EndopeptidasesGenome, ViralHost SpecificityOpen Reading FramesSalmonella PhagesAnimalsBinding SitesCattleGenomicsLigandsPoultrySalmonellaWastewaterendolysinEndopeptidasesLigandsWastewaterantibiotic resistancebacteriophagesbiopreservationendolysinligand-binding siteSalmonella

Identifiers

PMID38816206
PMCPMC11180984

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.