Evidence map›Paper›PMID 38814986›Full record

ArticlePLoS pathogens2024

A novel ilarvirus protein CP-RT is expressed via stop codon readthrough and suppresses RDR6-dependent RNA silencing.

Nina Lukhovitskaya, Katherine Brown, Lei Hua, Adrienne E Pate, John P Carr, Andrew E Firth

Abstract read
In one paragraph

Article in PLoS pathogens, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. RNAViruses · 2026
    Review
  2. Article
  3. Article
  4. ICTV Virus Taxonomy Profile:The Journal of general virology · 2025
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nina LukhovitskayaDepartment of Pathology, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-5968-6762
Katherine BrownDepartment of Pathology, University of Cambridge, Cambridge, United Kingdom.
Lei HuaDepartment of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Adrienne E PateDepartment of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
John P CarrDepartment of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0002-5028-2160
Andrew E FirthDepartment of Pathology, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0002-7986-9520

Funding

The Bill & Melinda Gates Foundation INV-002970Wellcome Trust
6 · The paper itself

Abstract

Ilarviruses are a relatively understudied but important group of plant RNA viruses that includes a number of crop pathogens. Their genomes comprise three RNA segments encoding two replicase subunits, movement protein, coat protein (CP), and (in some ilarvirus subgroups) a protein that suppresses RNA silencing. Here we report that, in many ilarviruses, RNA3 encodes an additional protein (termed CP-RT) as a result of ribosomal readthrough of the CP stop codon into a short downstream readthrough (RT) ORF. Using asparagus virus 2 as a model, we find that CP-RT is expressed in planta where it functions as a weak suppressor of RNA silencing. CP-RT expression is essential for persistent systemic infection in leaves and shoot apical meristem. CP-RT function is dependent on a putative zinc-finger motif within RT. Replacing the asparagus virus 2 RT with the RT of an ilarvirus from a different subgroup restored the ability to establish persistent infection. These findings open up a new avenue for research on ilarvirus silencing suppression, persistent meristem invasion and vertical transmission.

Indexed as

IlarvirusPlant DiseasesRNA InterferenceArabidopsis ProteinsCapsid ProteinsCodon, TerminatorNicotianaRNA-Dependent RNA PolymeraseRNA, ViralViral ProteinsArabidopsis ProteinsCapsid ProteinsCodon, TerminatorRDR6 protein, ArabidopsisRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins

Identifiers

PMID38814986
PMCPMC11166343

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.