Evidence map›Paper›PMID 38814867›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Natural variation of immune epitopes reveals intrabacterial antagonism.

Danielle M Stevens, Alba Moreno-Pérez, Alexandra J Weisberg, Charis Ramsing, Judith Fliegmann, Ning Zhang, Melanie Madrigal, Gregory Martin, Adam Steinbrenner, Georg Felix and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Genome Evolution in Plant Pathogenic Bacteria.Genome biology and evolution · 2026
    Review
  2. Review
  3. Specialization of independently acquired flagellar FliC proteins in plant-associatedProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Plant cell surface receptors.The Plant journal : for cell and molecular biology · 2026
    Review
  7. Article
  8. mamp-ml: A deep learning approach to epitope immunogenicity in plants.bioRxiv : the preprint server for biology · 2025
    Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Danielle M StevensIntegrative Genetics and Genomics Graduate Group, University of California, Davis, CA 95616.
Alba Moreno-PérezDepartment of Plant Pathology, University of California, Davis, CA 95616.ORCID 0000-0001-5089-8654
Alexandra J WeisbergDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331.ORCID 0000-0002-0045-1368
Charis RamsingDepartment of Plant Pathology, University of California, Davis, CA 95616.
Judith FliegmannCenter for Plant Molecular Biology, University of Tübingen, Tübingen 72074, Germany.ORCID 0000-0003-1021-8006
Ning ZhangBoyce Thompson Institute for Plant Research, Ithaca, NY 14853.ORCID 0000-0003-2775-1755
Melanie MadrigalDepartment of Plant Pathology, University of California, Davis, CA 95616.
Gregory MartinBoyce Thompson Institute for Plant Research, Ithaca, NY 14853.ORCID 0000-0003-0044-6830
Adam SteinbrennerDepartment of Biology, University of Washington, Seattle, WA 98195.ORCID 0000-0002-7493-678X
Georg FelixCenter for Plant Molecular Biology, University of Tübingen, Tübingen 72074, Germany.ORCID 0000-0002-6746-6185
Gitta CoakerDepartment of Plant Pathology, University of California, Davis, CA 95616.ORCID 0000-0003-0899-2449

Funding

Immune Perception of Bacterial Pathogens in PlantsR35GM136402 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Gitta Laurel Coaker · 2020 to 2026
$3.0M
Immunodiversity of plant receptor kinase networks for synthetic circuit designR35GM151272 · NIGMS · UNIVERSITY OF WASHINGTON · PI Adam D Steinbrenner · 2023 to 2026
$1.5M
HHS | National Institutes of Health (NIH) R35GM136402NIGMS NIH HHS R35 GM136402NIGMS NIH HHS R35 GM151272United States - Israel Binational Agricultural Research and Development Fund (BARD) IS-5499-22USDA | National Institute of Food and Agriculture (NIFA) 2021-67034-35049
6 · The paper itself

Abstract

Plants and animals detect biomolecules termed microbe-associated molecular patterns (MAMPs) and induce immunity. Agricultural production is severely impacted by pathogens which can be controlled by transferring immune receptors. However, most studies use a single MAMP epitope and the impact of diverse multicopy MAMPs on immune induction is unknown. Here, we characterized the epitope landscape from five proteinaceous MAMPs across 4,228 plant-associated bacterial genomes. Despite the diversity sampled, natural variation was constrained and experimentally testable. Immune perception in both

Indexed as

ArabidopsisEpitopesSolanum lycopersicumBacteriaBacterial ProteinsCold Shock Proteins and PeptidesGenome, BacterialPathogen-Associated Molecular Pattern MoleculesPeptide Elongation Factor TuPlant ImmunityBacterial ProteinsCold Shock Proteins and PeptidesEpitopesPathogen-Associated Molecular Pattern MoleculesPeptide Elongation Factor Tumicrobe-associated molecular patternsnatural variationpattern recognition receptorplant innate immunity

Identifiers

PMID38814867
PMCPMC11161748

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.