Evidence map›Paper›PMID 38814747›Full record

ArticleDevelopment (Cambridge, England)2024

An updated model of shoot apical meristem regulation by ERECTA family and CLAVATA3 signaling pathways in Arabidopsis.

Muhammad Uzair, Ricardo Andres Urquidi Camacho, Ziyi Liu, Alex M Overholt, Daniel DeGennaro, Liang Zhang, Brittani S Herron, Tian Hong, Elena D Shpak

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. ERECTA-family receptor kinases: versatile regulators of plant developmental signaling.The Plant journal : for cell and molecular biology · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Muhammad UzairDepartment of Biochemistry, Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA.
Ricardo Andres Urquidi CamachoUT-ORNL Graduate School of Genome Science and Technology , University of Tennessee, Knoxville, TN 37996, USA.ORCID 0000-0002-5526-3938
Ziyi LiuUT-ORNL Graduate School of Genome Science and Technology , University of Tennessee, Knoxville, TN 37996, USA.
Alex M OverholtDepartment of Biochemistry, Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA.
Daniel DeGennaroDepartment of Biochemistry, Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA.
Liang ZhangDepartment of Biochemistry, Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA.
Brittani S HerronDepartment of Biochemistry, Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA.
Tian HongDepartment of Biochemistry, Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA.ORCID 0000-0002-8212-7050
Elena D ShpakDepartment of Biochemistry, Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA.ORCID 0000-0002-5702-7517

Funding

Modeling transcriptional and post-transcriptional systems for regulating non-genetic heterogeneity in mammalian cellsR35GM149531 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI Tian Hong · 2023 to 2026
$1.5M
National Institute for Health and Care Research R35GM149531National Science Foundation IOS-2016756National Science Foundation IOS2016756NIGMS NIH HHS R35 GM149531NIH HHS R35GM149531
6 · The paper itself

Abstract

The shoot apical meristem (SAM) gives rise to the aboveground organs of plants. The size of the SAM is relatively constant due to the balance between stem cell replenishment and cell recruitment into new organs. In angiosperms, the transcription factor WUSCHEL (WUS) promotes stem cell proliferation in the central zone of the SAM. WUS forms a negative feedback loop with a signaling pathway activated by CLAVATA3 (CLV3). In the periphery of the SAM, the ERECTA family receptors (ERfs) constrain WUS and CLV3 expression. Here, we show that four ligands of ERfs redundantly inhibit the expression of these two genes. Transcriptome analysis confirmed that WUS and CLV3 are the main targets of ERf signaling and uncovered new ones. Analysis of promoter reporters indicated that the WUS expression domain mostly overlaps with the CLV3 domain and does not shift along the apical-basal axis in clv3 mutants. Our three-dimensional mathematical model captured gene expression distributions at the single-cell level under various perturbed conditions. Based on our findings, CLV3 regulates cellular levels of WUS mostly through autocrine signaling, and ERfs regulate the spatial expression of WUS, preventing its encroachment into the peripheral zone.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantHomeodomain ProteinsMeristemSignal TransductionModels, BiologicalProtein Serine-Threonine KinasesReceptors, Cell SurfaceTranscription FactorsArabidopsis ProteinsAT2G27250 protein, ArabidopsisER protein, ArabidopsisHomeodomain ProteinsProtein Serine-Threonine KinasesReceptors, Cell SurfaceTranscription FactorsWUSCHEL protein, ArabidopsisArabidopsisEPFLERECTAShoot apical meristemStem cellsWUSCHEL

Identifiers

PMID38814747
PMCPMC11234387

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.