Evidence map›Paper›PMID 38811902›Full record

ArticleBMC infectious diseases2024

Molecular characterization of human adenoviruses associated with pediatric respiratory infections in Karachi, Pakistan.

Khalid Mahmood, Waqar Ahmed, Saba Farooq, Gul Habib, Muhammad Ashfaq Sindhu, Afshan Asif, Thomas Iftner

Abstract read
In one paragraph

Article in BMC infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Khalid Mahmood *National Institute of Virology, Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan. Qureshi.qau@gmail.com.ORCID http://orcid.org/0000-0001-8647-8512
Waqar Ahmed *National Institute of Virology, Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan.
Saba FarooqNational Institute of Virology, Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan.
Gul HabibDepartment of Microbiology, Abbottabad University of Science and Technology, Havelian, Abbottabad, 22010, Pakistan.
Muhammad Ashfaq SindhuDepartment of Pediatrics, National Institute of Child Health, Jinnah Sindh Medical University, Karachi, Pakistan.
Afshan AsifDepartment of Pediatrics, Sindh Government Children Hospital, Karachi, Pakistan.
Thomas IftnerNational Institute of Virology, Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan.

Funding

Dr. Panjwani Center for Molecular Medicine and Drug Research, ICCBS, university of Karachi Project No. 3901-2021
6 · The paper itself

Abstract

Human adenoviruses (HAdVs) are a diverse group of viruses associated with respiratory infections in humans worldwide. However, there is a lack of research on the genetic diversity and epidemiology of HAdVs in Pakistan. This study characterized HAdVs in pediatric patients with respiratory tract infections in Karachi, Pakistan, between 2022 and 2023. We analyzed 762 nasopharyngeal samples of children ≤ 5 years. DNA extraction, followed by PCR targeting E2B and hexon genes, was carried out. Data analysis was performed on SPSS 25.0, and phylogenetic analysis of hexon gene was performed on MEGA 11. HAdV was detected in 7.34% (56/762) of patients round the year, but at a significantly higher rate during the winter season. Age was insignificantly associated with HAdV incidence (p = 0.662), but more than 62.5% (35/56) of positive cases were younger than 10 months. The circulating HAdVs were identified as six different types from species B (78.57%) and C (21.42%), with the majority of isolates found to be like B3. HAdV was found to be co-infected with bocavirus (5.4%) and measles (7.14%). These findings revealed a high frequency and genetic diversity of respiratory HAdVs in Karachi, Pakistan. We conclude that periodic and continuous surveillance of adenoviruses and other respiratory pathogens is necessary to improve the prognosis and management of respiratory diseases, thereby reducing the child mortality rate in Pakistan.

Indexed as

Adenoviruses, HumanAdenovirus Infections, HumanPhylogenyRespiratory Tract InfectionsChild, PreschoolCoinfectionDNA, ViralFemaleGenetic VariationGenotypeHumansInfantInfant, NewbornMaleNasopharynxPakistanDNA, ViralAdenovirusesHexonKarachiPediatricRespiratory tract infections

Identifiers

PMID38811902
PMCPMC11134642

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.