ArticleNature2024
The complete sequence and comparative analysis of ape sex chromosomes.
Abstract readComparative Study
In one paragraph
Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.
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93citing papers in PubMed
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Who cites it
93 citing papers in PubMed.
- Characterization of immunoglobulin loci inNAR genomics and bioinformatics · 2026Article
- A curated genome-scale nucleotide diversity panel of non-human primates.Genome biology · 2026Article
- Nuclear mitochondrial sequences in great ape telomere-to-telomere genomes.Genome research · 2026Article
- Pervasive Positive Selection on X-linked Ampliconic Genes in Primates.Genome biology and evolution · 2026Article
- A complete genome for the common marmoset.Cell · 2026Article
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- AniAnn's: alignment-free annotation of tandem repeat arrays using fast average nucleotide identity estimates.Bioinformatics (Oxford, England) · 2026Article
- Inferring the Relative Contributions of Evolutionary Processes Shaping X Chromosome Dynamics in the Common Marmoset (Callithrix jacchus) in the Presence of Twinning and Hematopoietic Chimerism.Genome biology and evolution · 2026Article
- Germline hypomethylation shapes dynamic CpG reservoirs in ape genomes.bioRxiv : the preprint server for biology · 2026Article
- Genome Assemblies for Seven Families of Birds From the Global South.Molecular ecology resources · 2026Article
- GnnDebugger: GNN based error correction in De Bruijn Graphs.BMC bioinformatics · 2026Article
- Article
- Genetic diversity and regulatory features of human-specific NOTCH2NL duplications.Cell genomics · 2026Article
- Two melanic pigment patterns are associated with a sex chromosome-linked oncogene in the mountain swordtailbioRxiv : the preprint server for biology · 2026Article
- Population-scale Y chromosome assemblies reveal recurrent remodeling within constrained architectures.bioRxiv : the preprint server for biology · 2026Article
- Accessing medically relevant complex regions with a pangenome graph of 20 near-complete Japanese haplotypes.Nature communications · 2026Article
- An X-linked sex determination mechanism in cannabis and hop.Nature communications · 2026Article
- Sex chromosome identification and genome curation from a single individual with SCINKD.Molecular biology and evolution · 2026Article
- A Complete Genome for the Common Marmoset.bioRxiv : the preprint server for biology · 2026Article
- Substitution Spectrum and Selection at G-quadruplexes in Great Ape Telomere-to-Telomere Genomes.Genome biology and evolution · 2026Article
33 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
84 authors.
Kateryna D Makova *Penn State University, University Park, PA, USA. kdm16@psu.edu.ORCID 0000-0002-6212-9526
Brandon D Pickett *National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0001-8235-4440
Robert S Harris *Penn State University, University Park, PA, USA.
Gabrielle A Hartley *University of Connecticut, Storrs, CT, USA.
Monika Cechova *University of California Santa Cruz, Santa Cruz, CA, USA.
Karol Pal *Penn State University, University Park, PA, USA.ORCID 0000-0002-7726-4691
Sergey NurkNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
DongAhn YooUniversity of Washington School of Medicine, Seattle, WA, USA.ORCID 0000-0003-0033-3721
Qiuhui LiJohns Hopkins University, Baltimore, MD, USA.
Prajna HebbarUniversity of California Santa Cruz, Santa Cruz, CA, USA.
Barbara C McGrathPenn State University, University Park, PA, USA.
Francesca AntonacciUniversità degli Studi di Bari Aldo Moro, Bari, Italy.ORCID 0000-0002-5833-6186
Margaux AubelUniversity of Münster, Münster, Germany.ORCID 0000-0003-1653-9441
Arjun BiddandaJohns Hopkins University, Baltimore, MD, USA.
Matthew BorchersStowers Institute, Kansas City, MO, USA.
Erich Bornberg-BauerUniversity of Münster, Münster, Germany.
Gerard G BouffardNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0001-8744-6440
Shelise Y BrooksNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Lucia CarboneOregon Health and Science University, Portland, OR, USA.ORCID 0000-0002-2118-107X
Laura CarrelPenn State University School of Medicine, Hershey, PA, USA.ORCID 0000-0002-5868-4228
Andrew CarrollGoogle, Mountain View, CA, USA.
Pi-Chuan ChangGoogle, Mountain View, CA, USA.
Chen-Shan ChinFoundation of Biological Data Sciences, Belmont, CA, USA.
Daniel E CookGoogle, Mountain View, CA, USA.
Sarah J C CraigPenn State University, University Park, PA, USA.
Luciana de GennaroUniversità degli Studi di Bari Aldo Moro, Bari, Italy.
Mark DiekhansUniversity of California Santa Cruz, Santa Cruz, CA, USA.ORCID 0000-0002-0430-0989
Amalia DutraNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Gage H GarciaUniversity of Washington School of Medicine, Seattle, WA, USA.ORCID 0009-0005-2383-722X
Patrick G S GradyUniversity of Connecticut, Storrs, CT, USA.ORCID 0000-0003-0180-7810
Richard E GreenUniversity of California Santa Cruz, Santa Cruz, CA, USA.ORCID 0000-0003-0516-5827
Diana HaddadNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Pille HallastThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.ORCID 0000-0002-0588-3987
William T HarveyUniversity of Washington School of Medicine, Seattle, WA, USA.
Glenn HickeyUniversity of California Santa Cruz, Santa Cruz, CA, USA.ORCID 0000-0002-2280-9404
David A HillisUniversity of California Santa Barbara, Santa Barbara, CA, USA.
Savannah J HoytUniversity of Connecticut, Storrs, CT, USA.ORCID 0000-0001-7804-3236
Hyeonsoo JeongUniversity of Washington School of Medicine, Seattle, WA, USA.
Kaivan KamaliPenn State University, University Park, PA, USA.
Sergei L Kosakovsky PondTemple University, Philadelphia, PA, USA.
Troy M LaPolicePenn State University, University Park, PA, USA.ORCID 0000-0003-3537-6633
Charles LeeThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.ORCID 0000-0001-7317-6662
Alexandra P LewisUniversity of Washington School of Medicine, Seattle, WA, USA.
Yong-Hwee E LohUniversity of California Santa Barbara, Santa Barbara, CA, USA.
Patrick MastersonNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Kelly M McGarveyNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Rajiv C McCoyJohns Hopkins University, Baltimore, MD, USA.ORCID 0000-0003-0615-146X
Paul MedvedevPenn State University, University Park, PA, USA.
Karen H MigaUniversity of California Santa Cruz, Santa Cruz, CA, USA.ORCID 0000-0002-3670-4507
Katherine M MunsonUniversity of Washington School of Medicine, Seattle, WA, USA.ORCID 0000-0001-8413-6498
Evgenia PakNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Benedict PatenUniversity of California Santa Cruz, Santa Cruz, CA, USA.ORCID 0000-0001-8863-3539
Brendan J PintoArizona State University, Tempe, AZ, USA.
Tamara PotapovaStowers Institute, Kansas City, MO, USA.ORCID 0000-0003-2761-1795
Arang RhieNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-9809-8127
Joana L RochaUniversity of California Berkeley, Berkeley, CA, USA.ORCID 0000-0003-3266-6328
Fedor RyabovMasters Program in National Research, University Higher School of Economics, Moscow, Russia.ORCID 0000-0001-8728-9465
Oliver A RyderSan Diego Zoological Society, San Diego, CA, USA.
Samuel SaccoUniversity of California Santa Cruz, Santa Cruz, CA, USA.
Kishwar ShafinGoogle, Mountain View, CA, USA.ORCID 0000-0001-5252-3434
Valery A ShepelevInstitute of Molecular Genetics, Moscow, Russia.
Viviane SlonTel Aviv University, Tel Aviv, Israel.ORCID 0000-0001-6485-7159
Steven J SolarNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Jessica M StorerUniversity of Connecticut, Storrs, CT, USA.
Peter H SudmantUniversity of California Berkeley, Berkeley, CA, USA.ORCID 0000-0002-9573-8248
SweetalanaPenn State University, University Park, PA, USA.
Alex SweetenNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-5316-2973
Michael G TassiaJohns Hopkins University, Baltimore, MD, USA.ORCID 0000-0002-5485-8155
Françoise Thibaud-NissenNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Mario VenturaUniversità degli Studi di Bari Aldo Moro, Bari, Italy.ORCID 0000-0001-7762-8777
Melissa A WilsonArizona State University, Tempe, AZ, USA.
Alice C YoungNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Huiqing ZengPenn State University, University Park, PA, USA.
Xinru ZhangPenn State University, University Park, PA, USA.ORCID 0000-0002-0633-2888
Zachary A SzpiechPenn State University, University Park, PA, USA.
Christian D HuberPenn State University, University Park, PA, USA.ORCID 0000-0002-2267-2604
Jennifer L GertonStowers Institute, Kansas City, MO, USA.ORCID 0000-0003-0743-3637
Soojin V YiUniversity of California Santa Barbara, Santa Barbara, CA, USA.ORCID 0000-0003-1497-1871
Michael C SchatzJohns Hopkins University, Baltimore, MD, USA.ORCID 0000-0002-4118-4446
Ivan A AlexandrovTel Aviv University, Tel Aviv, Israel.
Sergey KorenNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0002-1472-8962
Rachel J O'NeillUniversity of Connecticut, Storrs, CT, USA.ORCID 0000-0002-1525-6821
Evan E EichlerUniversity of Washington School of Medicine, Seattle, WA, USA. eee@gs.washington.edu.ORCID 0000-0002-8246-4014
Adam M PhillippyNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA. adam.phillippy@nih.gov.ORCID 0000-0003-2983-8934
Funding
National Biomedical Information ServicesZIHLM200888 · NLM · NATIONAL LIBRARY OF MEDICINE · PI PALTOO, DINA · 2009 to 2025
$5200.7MInter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6MImplementing the Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)U24HG010263 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI Enis Afgan, VINCENT JAMES CAREY · 2018 to 2026
$23.8MIdentifying and Characterizing the Full Spectrum of Haplotype-resolved Structural Variation in Human GenomesU24HG007497 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI Evan Eichler, Jan Oliver Korbel · 2019 to 2026
$17.2MSingle-molecule sequence assembly and analysisZIAHG200398 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI PHILLIPPY, ADAM · 2016 to 2025
$15.9MSequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3MAn Integrative Analysis of Structural Variation for the 1000 Genomes ProjectU41HG007497 · NHGRI · JACKSON LABORATORY · PI LEE, CHARLES · 2013 to 2017
$13.0MSequence-resolved structural variation of human genomesR01HG010169 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2018 to 2026
$4.5MTelomere-to-telomere assemblies of human genomesR01HG011274 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Karen Hayden Miga · 2020 to 2026
$4.5MFunction and fitness consequences of human genetic variationR35GM133747 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Rajiv Champion McCoy · 2019 to 2026
$3.3MPopulation dynamics and medical consequences of sex chromosome evolutionR35GM124827 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI WILSON, MELISSA A · 2017 to 2024
$2.7MComputation, Bioinformatics, and Statistics (CBIOS) Training ProgramT32GM102057 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI CHIAROMONTE, FRANCESCA, GIRIRAJAN, SANTHOSH · 2013 to 2022
$2.7MNCI NIH HHS R01 CA266339NCI NIH HHS U01 CA253481NHGRI NIH HHS R01 HG002385NHGRI NIH HHS R01 HG010169NHGRI NIH HHS R01 HG011274NHGRI NIH HHS R01 HG011641NHGRI NIH HHS U24 HG007497NHGRI NIH HHS U24 HG010263NHGRI NIH HHS U41 HG007497NIGMS NIH HHS R01 GM093939NIGMS NIH HHS R01 GM123312NIGMS NIH HHS R01 GM130691NIGMS NIH HHS R01 GM136684NIGMS NIH HHS R01 GM146462NIGMS NIH HHS R01 GM151683NIGMS NIH HHS R35 GM124827NIGMS NIH HHS R35 GM133747NIGMS NIH HHS R35 GM142916NIGMS NIH HHS R35 GM146886NIGMS NIH HHS R35 GM146926NIGMS NIH HHS R35 GM151945NIGMS NIH HHS T32 GM102057
Abstract
Apes possess two sex chromosomes-the male-specific Y chromosome and the X chromosome, which is present in both males and females. The Y chromosome is crucial for male reproduction, with deletions being linked to infertility
Indexed as
HominidaeX ChromosomeY ChromosomeAnimalsDNA Copy Number VariationsEndangered SpeciesEvolution, MolecularFemaleGorilla gorillaHumansHylobatidaeMalePan paniscusPan troglodytesPhylogenyPongo abelii
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