Evidence map›Paper›PMID 38811597›Full record

ArticleScientific reports2024

radioGWAS links radiome to genome to discover driver genes with somatic mutations for heterogeneous tumor image phenotype in pancreatic cancer.

Dandan Zheng, Paul M Grandgenett, Qi Zhang, Michael Baine, Yu Shi, Qian Du, Xiaoying Liang, Jeffrey Wong, Subhan Iqbal, Kiersten Preuss and 5 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Use of Radiomics in Characterizing Tumor Hypoxia.International journal of molecular sciences · 2025
    Review
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Dandan ZhengDepartment of Radiation Oncology, University of Rochester Medical Center, Rochester, NY, USA. dandan_zheng@urmc.rochester.edu.
Paul M GrandgenettEppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha, NE, USA.
Qi ZhangDepartment of Mathematics and Statistics, University of New Hampshire, Durham, NH, USA.
Michael BaineDepartment of Radiation Oncology, University of Nebraska Medical Center, Omaha, NE, USA.
Yu ShiSchool of Biological Sciences, University of Nebraska, Lincoln, NE, USA.
Qian DuSchool of Biological Sciences, University of Nebraska, Lincoln, NE, USA.
Xiaoying LiangDepartment of Radiation Oncology, Mayo Clinic, Jacksonville, FL, USA.
Jeffrey WongDepartment of Radiation Oncology, University of Nebraska Medical Center, Omaha, NE, USA.
Subhan IqbalSchool of Biological Sciences, University of Nebraska, Lincoln, NE, USA.
Kiersten PreussDepartment of Nutrition and Health Sciences, University of Nebraska, Lincoln, NE, USA.
Ahsan KamalDepartment of Radiation Oncology, University of Nebraska Medical Center, Omaha, NE, USA.
Hongfeng YuSchool of Computing, University of Nebraska, Lincoln, NE, USA.
Huijing DuDepartment of Mathematics, University of Nebraska, Lincoln, NE, USA.
Michael A HollingsworthEppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha, NE, USA. mahollin@unmc.edu.
Chi ZhangSchool of Biological Sciences, University of Nebraska, Lincoln, NE, USA. czhang5@unl.edu.

Funding

Tracking and Evaluation CoreU54GM115458 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI GUDA, CHITTIBABU · 2016 to 2025
$42.8M
Critical Resources Provided by UNMC Rapid Autopsy Program (RAP) Biorepository Stimulate Cancer ResearchR50CA211462 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Paul M Grandgenett · 2016 to 2026
$1.4M
NCI NIH HHS R50 CA211462Nebraska Collaboration Initiative 19-20Nebraska Collaboration Initiative 20-21NIGMS NIH HHS U54 GM115458NIH HHS 5U54GM115458-03
6 · The paper itself

Abstract

Addressing the significant level of variability exhibited by pancreatic cancer necessitates the adoption of a systems biology approach that integrates molecular data, biological properties of the tumors, medical images, and clinical features of the patients. In this study, a comprehensive multi-omics methodology was employed to examine a distinctive collection of patient dataset containing rapid autopsy tumor and normal tissue samples as well as longitudinal imaging with a focus on pancreatic cancer. By performing a whole exome sequencing analysis on tumor and normal tissues to identify somatic gene variants and a radiomic feature analysis to tumor CT images, the genome-wide association approach established a connection between pancreatic cancer driver genes and relevant radiomic features, enabling a thorough and quantitative assessment of the heterogeneity of pancreatic tumors. The significant association between sets of genes and radiomic features revealed the involvement of genes in shaping tumor morphological heterogeneity. Some results of the association established a connection between the molecular level mechanism and their outcomes at the level of tumor structural heterogeneity. Because tumor structure and tumor structural heterogeneity are related to the patients' overall survival, patients who had pancreatic cancer driver gene mutations with an association to a certain radiomic feature have been observed to experience worse survival rates than cases without these somatic mutations. Furthermore, the association analysis has revealed potential gene mutations and radiomic feature candidates that warrant further investigation in future research endeavors.

Indexed as

Exome SequencingMutationPancreatic NeoplasmsFemaleGenome-Wide Association StudyHumansMalePhenotypeTomography, X-Ray Computed

Identifiers

PMID38811597
PMCPMC11137018

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.