ArticleNature communications2024
Haplotype-resolved gapless genome and chromosome segment substitution lines facilitate gene identification in wild rice.
Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Whole-Genome Variants Resource of 144 Oryza rufipogon Accessions.Scientific data · 2026Article
- A Rare Allele of ST5 From Wild Rice Enhances Salt Tolerance in Rice.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Article
- Comparative transcriptome analysis reveals key genes and regulatory networks regulating flowering in rice varieties with different photoperiod sensitivity.BMC plant biology · 2026Article
- The Genome of the Rice Variety Mowanggu Provides Insight Into Resistance to Magnaporthe oryzae.Molecular plant pathology · 2026Article
- Pan-genome of wild and cultivated rice uncovers genetic diversity, lost and selected sequences during rice domestication.Rice (New York, N.Y.) · 2026Article
- Identification of genome size and heterozygosity in 510 Jujube (Frontiers in plant science · 2026Article
- Graph pan-genome advances genetic discoveries and the improvement of eggplant.Horticulture research · 2026Article
- Novel perpetual genetic population development and genome assembly of superior maize inbred lines provide insights into genetic improvement.BMC biology · 2025Article
- Haplotype analysis and molecular marker development for the cold tolerance gene OsCTS11 at the seedling stage of rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- The telomere-to-telomere genome of Pucai () (Horticulture research · 2025Article
- A pangenome reference of wild and cultivated rice.Nature · 2025Article
- Integrative Multi-Omics Approaches for Identifying and Characterizing Biological Elements in Crop Traits: Current Progress and Future Prospects.International journal of molecular sciences · 2025Review
- Review
- Comprehensive genetic diversity revealed in the pre-breeding RILs (Frontiers in genetics · 2025Article
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Authors and funding
24 authors.
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Abstract
The abundant genetic variation harbored by wild rice (Oryza rufipogon) has provided a reservoir of useful genes for rice breeding. However, the genome of wild rice has not yet been comprehensively assessed. Here, we report the haplotype-resolved gapless genome assembly and annotation of wild rice Y476. In addition, we develop two sets of chromosome segment substitution lines (CSSLs) using Y476 as the donor parent and cultivated rice as the recurrent parents. By analyzing the gapless reference genome and CSSL population, we identify 254 QTLs associated with agronomic traits, biotic and abiotic stresses. We clone a receptor-like kinase gene associated with rice blast resistance and confirm its wild rice allele improves rice blast resistance. Collectively, our study provides a haplotype-resolved gapless reference genome and demonstrates a highly efficient platform for gene identification from wild rice.
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